Impact of Phosphorylation on the Physiological Form of Human alpha-Synuclein in Aqueous Solution

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2024-10-27 DOI:10.1021/acs.jcim.4c0117210.1021/acs.jcim.4c01172
Emile de Bruyn, Anton Emil Dorn, Giulia Rossetti*, Claudio Fernandez, Tiago F. Outeiro, Jörg B. Schulz and Paolo Carloni, 
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Abstract

Serine 129 can be phosphorylated in pathological inclusions formed by the intrinsically disordered protein human α-synuclein (AS), a key player in Parkinson’s disease and other synucleinopathies. Here, molecular simulations provide insight into the structural ensemble of phosphorylated AS. The simulations allow us to suggest that phosphorylation significantly impacts the structural content of the physiological AS conformational ensemble in aqueous solution, as the phosphate group is mostly solvated. The hydrophobic region of AS contains β-hairpin structures, which may increase the propensity of the protein to undergo amyloid formation, as seen in the nonphysiological (nonacetylated) form of the protein in a recent molecular simulation study. Our findings are consistent with existing experimental data with the caveat of the observed limitations of the force field for the phosphorylated moiety.

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磷酸化对水溶液中人类 alpha-Synuclein 生理形态的影响
在帕金森病和其他突触核蛋白病的关键因素--人类α-突触核蛋白(AS)形成的病理内含物中,丝氨酸129会发生磷酸化。在这里,分子模拟让我们深入了解了磷酸化 AS 的结构组合。模拟结果表明,由于磷酸基团大部分被溶解,磷酸化对水溶液中生理性 AS 构象组合的结构内容产生了重大影响。AS的疏水区域含有β-发夹结构,这可能会增加该蛋白质形成淀粉样蛋白的倾向,正如最近的分子模拟研究在该蛋白质的非生理(非乙酰化)形式中看到的那样。我们的发现与现有的实验数据一致,但需要注意的是,力场对磷酸化分子的作用存在局限性。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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