Small and long non-coding RNAs: Past, present, and future

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-11-14 DOI:10.1016/j.cell.2024.10.024
Ling-Ling Chen, V. Narry Kim
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Abstract

Since the introduction of the central dogma of molecular biology in 1958, various RNA species have been discovered. Messenger RNAs transmit genetic instructions from DNA to make proteins, a process facilitated by housekeeping non-coding RNAs (ncRNAs) such as small nuclear RNAs (snRNAs), ribosomal RNAs (rRNAs), and transfer RNAs (tRNAs). Over the past four decades, a wide array of regulatory ncRNAs have emerged as crucial players in gene regulation. In celebration of Cell’s 50th anniversary, this Review explores our current understanding of the most extensively studied regulatory ncRNAs—small RNAs and long non-coding RNAs (lncRNAs)—which have profoundly shaped the field of RNA biology and beyond. While small RNA pathways have been well documented with clearly defined mechanisms, lncRNAs exhibit a greater diversity of mechanisms, many of which remain unknown. This Review covers pivotal events in their discovery, biogenesis pathways, evolutionary traits, action mechanisms, functions, and crosstalks among ncRNAs. We also highlight their roles in pathophysiological contexts and propose future research directions to decipher the unknowns of lncRNAs by leveraging lessons from small RNAs.
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小型和长型非编码 RNA:过去、现在和未来
自 1958 年提出分子生物学的核心教条以来,人们发现了各种 RNA 物种。信使核糖核酸(Messenger RNA)将 DNA 的遗传指令传递给蛋白质的制造者,而这一过程则由核小核糖核酸(snRNA)、核糖体核糖核酸(rRNA)和转运核糖核酸(tRNA)等看家非编码核糖核酸(ncRNA)来完成。在过去的四十年中,一系列调控性 ncRNA 已经成为基因调控的关键角色。为庆祝《细胞》杂志创刊 50 周年,本综述探讨了我们目前对研究最广泛的调控 ncRNA--小 RNA 和长非编码 RNA(lncRNA)--的理解,它们深刻地影响了 RNA 生物学及其他领域。小 RNA 通路的机制已被清楚地记录下来,而 lncRNA 则表现出更多样化的机制,其中许多机制仍不为人所知。本综述涵盖了发现它们的关键事件、生物发生途径、进化特征、作用机制、功能以及 ncRNA 之间的交叉关系。我们还强调了它们在病理生理环境中的作用,并提出了未来的研究方向,以利用小 RNA 的经验教训来破解 lncRNA 的未知问题。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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