Transcriptome and genome-wide analysis of the mango glycosyltransferase family involved in mangiferin biosynthesis.

IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY BMC Genomics Pub Date : 2024-11-12 DOI:10.1186/s12864-024-10998-5
Yibo Bai, Xinran Huang, Rundong Yao, Muhammad Mubashar Zafar, Waqas Shafqat Chattha, Fei Qiao, Hanqing Cong
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Abstract

Mangiferin, a C-glucosyl xanthone, is a biologically active glycoside naturally synthesized in mango. Glycosyltransferase can catalyze the biosynthesis of mangiferin. In this study, we identified 221 members of the UGT glycosyltransferase family in mango. The 221 MiUGT genes were grouped into 13 subfamilies through phylogenetic tree analysis with Arabidopsis, Chinese bayberry, and mango. All UGT family members in mango were unevenly distributed on 17 chromosomes and found that tandem duplication dominated the expansion of UGT family members in mango. Purification selection primarily influenced the evolution of the mango UGT family members. In addition, cis-element analysis of the mango UGT gene family revealed the presence of MYB binding sites, which are involved in flavonoid biosynthesis; which further supports the role of UGT family members in the synthesis of flavonoids. To verify these results, we analyzed the expression of UGT family members in mango leaves, stems, and different developmental stages of fruit peel. The RNA-seq and qRT-PCR results showed significant differences in the expression patterns of MiUGT genes in various tissues and developmental stages of mango. We identified MiUGT gene-specific expression at different stages of fruit development. These results lay a theoretical foundation for research on the relationship between members of the mango UGT family and the synthesis of flavonoids, mangiferin.

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参与芒果苷生物合成的芒果糖基转移酶家族的转录组和全基因组分析。
芒果苷是一种 C-葡糖基黄酮,是芒果中天然合成的具有生物活性的糖苷。糖基转移酶可催化芒果苷的生物合成。在这项研究中,我们在芒果中发现了 221 个 UGT 糖基转移酶家族成员。通过与拟南芥、杨梅和芒果的系统发生树分析,将这221个MiUGT基因分为13个亚科。芒果中的所有UGT家族成员不均匀地分布在17条染色体上,发现串联复制主导了芒果中UGT家族成员的扩展。纯化选择主要影响了芒果 UGT 家族成员的进化。此外,对芒果 UGT 基因家族的顺式元素分析表明,其中存在参与类黄酮生物合成的 MYB 结合位点;这进一步支持了 UGT 家族成员在类黄酮合成中的作用。为了验证这些结果,我们分析了 UGT 家族成员在芒果叶、茎和果皮不同发育阶段的表达情况。RNA-seq和qRT-PCR结果显示,MiUGT基因在芒果不同组织和发育阶段的表达模式存在显著差异。我们确定了 MiUGT 基因在果实不同发育阶段的特异性表达。这些结果为研究芒果 UGT 家族成员与黄酮类化合物芒果素合成之间的关系奠定了理论基础。
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来源期刊
BMC Genomics
BMC Genomics 生物-生物工程与应用微生物
CiteScore
7.40
自引率
4.50%
发文量
769
审稿时长
6.4 months
期刊介绍: BMC Genomics is an open access, peer-reviewed journal that considers articles on all aspects of genome-scale analysis, functional genomics, and proteomics. BMC Genomics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all areas of biology and medicine. We offer an efficient, fair and friendly peer review service, and are committed to publishing all sound science, provided that there is some advance in knowledge presented by the work.
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