Drastic variation in mitochondrial genome organization between two congeneric species of bird lice (Philopteridae: Ibidoecus).

IF 3.5 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY BMC Genomics Pub Date : 2024-11-14 DOI:10.1186/s12864-024-11005-7
Mei-Ling Cao, Yu Nie, Xi-Long Yi, Jun Xiong, Wei Wang, Yuan-Ping Deng, Yi-Tian Fu, Guo-Hua Liu, Renfu Shao
{"title":"Drastic variation in mitochondrial genome organization between two congeneric species of bird lice (Philopteridae: Ibidoecus).","authors":"Mei-Ling Cao, Yu Nie, Xi-Long Yi, Jun Xiong, Wei Wang, Yuan-Ping Deng, Yi-Tian Fu, Guo-Hua Liu, Renfu Shao","doi":"10.1186/s12864-024-11005-7","DOIUrl":null,"url":null,"abstract":"<p><p>The over 4,100 species of bird lice are classified into 214 genera in the parvorders Amblycera and Ischnocera. Congeneric species of bird lice usually share much similarity in morphology and in mitochondrial (mt) genome organization. Two recent studies, however, reported substantial intra-genus variation in mt genome organization in bird lice. Both the ancestral single-chromosome mt genome and a fragmented mt genome with two or three minichromosomes were observed in the genera Austromenopon and Laemobothrion. To better understand intra-genus variation in mt genome organization, we sequenced the complete mt genome of the white spoonbill louse Ibidoecus plataleae and compared it with that of the glossy ibis feather louse Ibidoecus bisignatus reported previously. We found that I. plataleae had a fragmented mt genome with 12 minichromosomes; each minichromosome was 2,798 to 3,628 bp in size and had 2 to 6 genes. This is in stark contrast to the mt genome of I. bisignatus, which has all genes on a single chromosome, 14,909 bp in size. This is the most drastic intra-genus variation in mt genome organization observed to date in animals, indicating an unprecedented rapid process of mt genome fragmentation in the genus Ibidoecus. The divergence time between I. plataleae and I. bisignatus is currently unknown but is estimated to be less than 23 million years. Either many minichromosal split events occurred after I. plataleae diverged from I. bisignatus, or one minichromosome splits into multiple minichromosomes in a single event. Sequencing and comparing more Ibidoecusi species will help understand the unusual mt genome fragmentation in this genus.</p>","PeriodicalId":9030,"journal":{"name":"BMC Genomics","volume":"25 1","pages":"1084"},"PeriodicalIF":3.5000,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11566740/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC Genomics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s12864-024-11005-7","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

The over 4,100 species of bird lice are classified into 214 genera in the parvorders Amblycera and Ischnocera. Congeneric species of bird lice usually share much similarity in morphology and in mitochondrial (mt) genome organization. Two recent studies, however, reported substantial intra-genus variation in mt genome organization in bird lice. Both the ancestral single-chromosome mt genome and a fragmented mt genome with two or three minichromosomes were observed in the genera Austromenopon and Laemobothrion. To better understand intra-genus variation in mt genome organization, we sequenced the complete mt genome of the white spoonbill louse Ibidoecus plataleae and compared it with that of the glossy ibis feather louse Ibidoecus bisignatus reported previously. We found that I. plataleae had a fragmented mt genome with 12 minichromosomes; each minichromosome was 2,798 to 3,628 bp in size and had 2 to 6 genes. This is in stark contrast to the mt genome of I. bisignatus, which has all genes on a single chromosome, 14,909 bp in size. This is the most drastic intra-genus variation in mt genome organization observed to date in animals, indicating an unprecedented rapid process of mt genome fragmentation in the genus Ibidoecus. The divergence time between I. plataleae and I. bisignatus is currently unknown but is estimated to be less than 23 million years. Either many minichromosal split events occurred after I. plataleae diverged from I. bisignatus, or one minichromosome splits into multiple minichromosomes in a single event. Sequencing and comparing more Ibidoecusi species will help understand the unusual mt genome fragmentation in this genus.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
两种同属鸟虱(Philopteridae: Ibidoecus)之间线粒体基因组组织的巨大差异。
鸟虱有 4100 多种,分为 Amblycera 和 Ischnocera 两大类 214 个属。同属的鸟虱物种通常在形态和线粒体(mt)基因组结构上有很大的相似性。然而,最近的两项研究报告称,鸟虱的线粒体基因组组织在种内有很大差异。在 Austromenopon 属和 Laemobothrion 属中,既观察到了祖先的单染色体 mt 基因组,也观察到了带有两个或三个小染色体的片段化 mt 基因组。为了更好地了解种内 mt 基因组组织的变异,我们对白琵鹭虱 Ibidoecus plataleae 的完整 mt 基因组进行了测序,并与之前报道的光朱鹭羽虱 Ibidoecus bisignatus 的基因组进行了比较。我们发现,I. plataleae 的 mt 基因组比较破碎,有 12 个小染色体;每个小染色体的大小为 2,798 至 3,628 bp,有 2 至 6 个基因。这与 I. bisignatus 的 mt 基因组形成鲜明对比,后者的所有基因都在单条染色体上,大小为 14 909 bp。这是迄今为止在动物中观察到的mt基因组组织中最剧烈的种内差异,表明伊比杜鹃属的mt基因组破碎过程前所未有的迅速。I.plataleae和I.bisignatus之间的分化时间目前尚不清楚,但估计少于2300万年。要么是在I. plataleae与I. bisignatus分化之后发生了许多小染色体分裂事件,要么是一个小染色体在一次事件中分裂成多个小染色体。对更多的 Ibidoecusi 种类进行测序和比较将有助于了解该属中不寻常的 mt 基因组破碎现象。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
BMC Genomics
BMC Genomics 生物-生物工程与应用微生物
CiteScore
7.40
自引率
4.50%
发文量
769
审稿时长
6.4 months
期刊介绍: BMC Genomics is an open access, peer-reviewed journal that considers articles on all aspects of genome-scale analysis, functional genomics, and proteomics. BMC Genomics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all areas of biology and medicine. We offer an efficient, fair and friendly peer review service, and are committed to publishing all sound science, provided that there is some advance in knowledge presented by the work.
期刊最新文献
A catalog of gene editing sites and genetic variations in editing sites in model organisms. DeCGR: an interactive toolkit for deciphering complex genomic rearrangements from Hi-C data. Deciphering spatial domains from spatially resolved transcriptomics through spatially regularized deep graph networks. Differential regulation of magnesium transporters Slc41, Cnnm and Trpm6-7 in the kidney of salmonids may represent evolutionary adaptations to high salinity environments. Efficient small fragment sequencing of human, cattle, and bison miRNA, small RNA, or csRNA-seq libraries using AVITI.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1