Out-of-distribution detection in digital pathology: Do foundation models bring the end to reconstruction-based approaches?

IF 7 2区 医学 Q1 BIOLOGY Computers in biology and medicine Pub Date : 2025-01-01 Epub Date: 2024-11-09 DOI:10.1016/j.compbiomed.2024.109327
Milda Pocevičiūtė, Yifan Ding, Ruben Bromée, Gabriel Eilertsen
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Abstract

Artificial intelligence (AI) has shown promising results for computational pathology tasks. However, one of the limitations in clinical practice is that these algorithms are optimised for the distribution represented by the training data. For out-of-distribution (OOD) data, they often deliver predictions with equal confidence, even though these often are incorrect. In the pursuit of OOD detection in digital pathology, this study evaluates the state-of-the-art (SOTA) in computational pathology OOD detection, based on diffusion probabilistic models, specifically by adapting the latent diffusion model (LDM) for this purpose (AnoLDM). We compare this against post-hoc methods based on the latent space of foundation models, which are SOTA in general computer vision research. The approaches are not only evaluated on data from the same medical centres as the training set, but also on several datasets with data distribution shifts. The results show that AnoLDM performs similarly well or better than diffusion model based approaches published in previous studies in computational pathology but with reduced computational costs. However, our optimal configuration of an approach based on foundation models (kang_residual) outperforms AnoLDM on OOD detection on data not experiencing any covariate shifts, with an AUROC of 96.17 versus 91.86. Interestingly, AnoLDM is more successful at handling the data distribution shifts investigated in this study. However, both AnoLDM and kang_residual suffer substantial loss in the performance under the data distribution shifts, hence future work should focus on improving the generalisation of OOD detection for computational pathology applications.

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数字病理学中的分布外检测:基础模型会终结基于重建的方法吗?
人工智能(AI)在计算病理学任务方面取得了令人鼓舞的成果。然而,临床实践中的一个局限是,这些算法针对训练数据所代表的分布进行了优化。对于超出分布范围(OOD)的数据,这些算法通常会提供相同置信度的预测,尽管这些预测往往是不正确的。为了实现数字病理学中的 OOD 检测,本研究评估了基于扩散概率模型的计算病理学 OOD 检测的最新技术(SOTA),特别是为此目的对潜在扩散模型(LDM)进行了调整(AnoLDM)。我们将其与基于基础模型潜在空间的事后方法进行了比较,后者是一般计算机视觉研究中的 SOTA。我们不仅在来自与训练集相同的医疗中心的数据上对这些方法进行了评估,还在数据分布发生变化的几个数据集上对它们进行了评估。结果表明,AnoLDM 的表现与之前在计算病理学研究中发表的基于扩散模型的方法类似,甚至更好,但计算成本更低。然而,我们基于基础模型的方法(kang_residual)的最佳配置在未经历任何协变量变化的数据的 OOD 检测方面优于 AnoLDM,AUROC 为 96.17,而 AnoLDM 为 91.86。有趣的是,AnoLDM 在处理本研究调查的数据分布变化方面更为成功。因此,未来的工作重点应该是提高计算病理学应用中 OOD 检测的通用性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
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