Pseudomonas huanghezhanensis sp. nov. and Pseudomonas fjordensis sp. nov., two novel species isolated from seawater of Arctic Kongsfjorden in the Ny-Ålesund area, Svalbard.

IF 2 3区 生物学 Q4 MICROBIOLOGY International journal of systematic and evolutionary microbiology Pub Date : 2024-11-01 DOI:10.1099/ijsem.0.006584
Hui-Yan Ge, Yong-Qiang Hu, Yin-Xin Zeng, Zuo-Qi Wang, Wei Han, Ting Hu, Yu Du
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Abstract

Two Gram-stain-negative bacterial strains, BSw22131T and DMSP-1T, were isolated from seawater of Arctic Kongsfjorden in the Ny-Ålesund area, Svalbard. Strains BSw22131T and DMSP-1T were within the genus Pseudomonas and presented 98.1 and 99.8% 16S rRNA gene sequence similarity to Pseudomonas piscicola P50T and Pseudomonas paracarnis V5/DAB/2/5T, respectively. However, the results of multilocus sequence analysis (concatenated 16S rRNA, gyrB, rpoB and rpoD gene sequences) and whole-genome sequence analysis indicated that BSw22131T and DMSP-1T were most closely related to Pseudomonas petrae P2653T and Pseudomonas lactis DSM 29167T, respectively. The genome G+C contents of strains BSw22131T and DMSP-1T were 58.2 and 60.0%, respectively. The two isolates presented digital DNA-DNA hybridization and average nucleotide identity values of less than 70 and 96%, respectively, with type strain genomes of their close relatives. BSw22131T contained summed feature 3 (C16 : 1  ω6c/C16 : 1  ω7c), C16 : 0 and summed feature 8 (C18 : 1  ω6c/C18 : 1  ω7c) as the major cellular fatty acids, whereas DMSP-1T contained an additional C17 : 0-cyclo as the major fatty acid. The major quinones of both strains were Q-9 (57.5-77.2%) and Q-8 (22.8-37.2%), and their major cellular polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. BSw22131T could be differentiated from its related species by positive ornithine decarboxylase, esterase (C8) and l-rhamnose and d-fructose-6-PO4 utilization, whereas DMSP-1T could be differentiated by positive acid phosphatase but negative p-hydroxyphenylacetic acid utilization. The two strains were negative for the reduction of nitrates but contained genes related to dimethylsulfoniopropionate catabolism. The results of the polyphasic taxonomy analysis revealed that strains BSw22131T and DMSP-1T represent two novel species of the genus Pseudomonas, for which the names Pseudomonas huanghezhanensis sp. nov. (type strain BSw22131T = CCTCC AB 2019135T = JCM 36635T = DSM 117336T) and Pseudomonas fjordensis sp. nov. (type strain DMSP-1T = CCTCC AB 2019124T = JCM 36636T = DSM 117337T) are proposed.

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从斯瓦尔巴群岛 Ny-Ålesund 地区北极孔斯峡湾海水中分离出的两个新物种--黄鹤山假单胞菌新种和峡湾假单胞菌新种。
从斯瓦尔巴特群岛尼-奥勒松地区北极孔斯峡湾的海水中分离出了两株革兰氏染色阴性细菌--BSw22131T和DMSP-1T。菌株 BSw22131T 和 DMSP-1T 属于假单胞菌属,与 Pseudomonas piscicola P50T 和 Pseudomonas paracarnis V5/DAB/2/5T 的 16S rRNA 基因序列相似度分别为 98.1%和 99.8%。然而,多焦点序列分析(16S rRNA、gyrB、rpoB 和 rpoD 基因序列连接)和全基因组序列分析的结果表明,BSw22131T 和 DMSP-1T 分别与 Pseudomonas petrae P2653T 和 Pseudomonas lactis DSM 29167T 关系最密切。菌株 BSw22131T 和 DMSP-1T 的基因组 G+C 含量分别为 58.2% 和 60.0%。这两个分离菌株与其近缘菌株基因组的数字 DNA-DNA 杂交和平均核苷酸同一性值分别低于 70% 和 96%。BSw22131T 包含总特征 3(C16 : 1 ω6c/C16 : 1 ω7c)、C16 :0 和总和特征 8(C18 : 1 ω6c/C18 : 1 ω7c)作为主要的细胞脂肪酸,而 DMSP-1T 则含有额外的 C17 :0-cyclo 作为主要脂肪酸。两株菌株的主要醌类化合物为 Q-9(57.5-77.2%)和 Q-8(22.8-37.2%),主要细胞极性脂质为二磷脂酰甘油、磷脂酰乙醇胺和磷脂酰甘油。BSw22131T 可通过鸟氨酸脱羧酶、酯酶(C8)、l-鼠李糖和 d-果糖-6-PO4利用率的阳性结果与其相关菌株区分开来,而 DMSP-1T 则可通过酸性磷酸酶阳性但对羟基苯乙酸利用率阴性的结果区分开来。这两株菌株的硝酸盐还原能力均为阴性,但含有与二甲基硫代丙酸盐分解代谢有关的基因。多相分类分析结果表明,菌株 BSw22131T 和 DMSP-1T 代表了假单胞菌属的两个新种,命名为 Pseudomonas huanghezhanensis sp.nov.(模式菌株 BSw22131T = CCTCC AB 2019135T = JCM 36635T = DSM 117336T)和峡湾假单胞菌 sp.nov.(模式菌株 DMSP-1T = CCTCC AB 2019124T = JCM 36636T = DSM 117337T)。
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来源期刊
CiteScore
5.20
自引率
21.40%
发文量
426
审稿时长
1 months
期刊介绍: Published by the Microbiology Society and owned by the International Committee on Systematics of Prokaryotes (ICSP), a committee of the Bacteriology and Applied Microbiology Division of the International Union of Microbiological Societies, International Journal of Systematic and Evolutionary Microbiology is the leading forum for the publication of novel microbial taxa and the ICSP’s official journal of record for prokaryotic names. The journal welcomes high-quality research on all aspects of microbial evolution, phylogenetics and systematics, encouraging submissions on all prokaryotes, yeasts, microfungi, protozoa and microalgae across the full breadth of systematics including: Identification, characterisation and culture preservation Microbial evolution and biodiversity Molecular environmental work with strong taxonomic or evolutionary content Nomenclature Taxonomy and phylogenetics.
期刊最新文献
Corrigendum. Proposal of Lactobacillus amylovorus subsp. animalis subsp. nov. and an emended description of Lactobacillus amylovorus. Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 74, part 7 of the IJSEM. Bifidobacterium favimelis sp. nov., isolated from black comb honey. Microbispora maris sp. nov., a novel actinobacterium isolated from the gill of the leopard coral grouper (Plectropomus leopardus). International Committee on Systematics of Prokaryotes: subcommittee on the taxonomy of methanogenic archaea. Minutes of the closed, online meeting held 06 September 2023.
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