Artificial intelligence-based automated determination in breast and colon cancer and distinction between atypical and typical mitosis using a cloud-based platform.

IF 2.3 4区 医学 Q3 ONCOLOGY Pathology & Oncology Research Pub Date : 2024-10-30 eCollection Date: 2024-01-01 DOI:10.3389/pore.2024.1611815
Nilay Bakoglu, Emine Cesmecioglu, Hirotsugu Sakamoto, Masao Yoshida, Takashi Ohnishi, Seung-Yi Lee, Lindsey Smith, Yukako Yagi
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Abstract

Artificial intelligence (AI) technology in pathology has been utilized in many areas and requires supervised machine learning. Notably, the annotations that define the ground truth for the identification of different confusing process pathologies, vary from study to study. In this study, we present our findings in the detection of invasive breast cancer for the IHC/ISH assessment system, along with the automated analysis of each tissue layer, cancer type, etc. in colorectal specimens. Additionally, models for the detection of atypical and typical mitosis in several organs were developed using existing whole-slide image (WSI) sets from other AI projects. All H&E slides were scanned by different scanners with a resolution of 0.12-0.50 μm/pixel, and then uploaded to a cloud-based AI platform. Convolutional neural networks (CNN) training sets consisted of invasive carcinoma, atypical and typical mitosis, and colonic tissue elements (mucosa-epithelium, lamina propria, muscularis mucosa, submucosa, muscularis propria, subserosa, vessels, and lymph nodes). In total, 59 WSIs from 59 breast cases, 217 WSIs from 54 colon cases, and 28 WSIs from 23 different types of tumor cases with relatively higher amounts of mitosis were annotated for the training. The harmonic average of precision and sensitivity was scored as F1 by AI. The final AI models of the Breast Project showed an F1 score of 94.49% for Invasive carcinoma. The mitosis project showed F1 scores of 80.18%, 97.40%, and 97.68% for mitosis, atypical, and typical mitosis layers, respectively. Overall F1 scores for the current results of the colon project were 90.02% for invasive carcinoma, 94.81% for the submucosa layer, and 98.02% for vessels and lymph nodes. After the training and optimization of the AI models and validation of each model, external validators evaluated the results of the AI models via blind-reader tasks. The AI models developed in this study were able to identify tumor foci, distinguish in situ areas, define colonic layers, detect vessels and lymph nodes, and catch the difference between atypical and typical mitosis. All results were exported for integration into our in-house applications for breast cancer and AI model development for both whole-block and whole-slide image-based 3D imaging assessment.

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利用云平台对乳腺癌和结肠癌进行基于人工智能的自动测定,并区分非典型有丝分裂和典型有丝分裂。
病理学中的人工智能(AI)技术已在许多领域得到应用,并需要有监督的机器学习。值得注意的是,在不同的研究中,确定识别不同混淆过程病理的基本事实的注释各不相同。在本研究中,我们介绍了 IHC/ISH 评估系统对浸润性乳腺癌的检测结果,以及对结直肠标本中各组织层、癌症类型等的自动分析结果。此外,我们还利用其他人工智能项目中现有的全切片图像集(WSI)开发了用于检测多个器官中非典型和典型有丝分裂的模型。所有 H&E 切片均由不同的扫描仪以 0.12-0.50 μm/pixel 的分辨率扫描,然后上传到基于云的人工智能平台。卷积神经网络(CNN)训练集包括浸润癌、非典型和典型有丝分裂以及结肠组织元素(粘膜上皮、固有层、粘膜肌层、粘膜下层、固有肌层、浆膜下层、血管和淋巴结)。共有 59 个乳腺病例的 59 个 WSIs、54 个结肠病例的 217 个 WSIs 和 23 个不同类型肿瘤病例中有丝分裂相对较多的 28 个 WSIs 被标注用于训练。精确度和灵敏度的调和平均值被人工智能评为 F1。乳腺项目的最终人工智能模型显示,浸润性癌的 F1 得分为 94.49%。有丝分裂项目显示,有丝分裂层、非典型有丝分裂层和典型有丝分裂层的 F1 分数分别为 80.18%、97.40% 和 97.68%。结肠项目当前结果的总体 F1 分数为:浸润癌 90.02%,粘膜下层 94.81%,血管和淋巴结 98.02%。在对人工智能模型进行训练和优化以及对每个模型进行验证后,外部验证人员通过盲读任务对人工智能模型的结果进行了评估。本研究开发的人工智能模型能够识别肿瘤病灶、区分原位区域、定义结肠层、检测血管和淋巴结,并捕捉非典型有丝分裂和典型有丝分裂之间的区别。所有结果都已导出,以便整合到我们内部的乳腺癌应用软件中,并为基于整块和整张图像的三维成像评估开发人工智能模型。
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来源期刊
CiteScore
6.30
自引率
0.00%
发文量
134
审稿时长
4-8 weeks
期刊介绍: Pathology & Oncology Research (POR) is an interdisciplinary Journal at the interface of pathology and oncology including the preclinical and translational research, diagnostics and therapy. Furthermore, POR is an international forum for the rapid communication of reviews, original research, critical and topical reports with excellence and novelty. Published quarterly, POR is dedicated to keeping scientists informed of developments on the selected biomedical fields bridging the gap between basic research and clinical medicine. It is a special aim for POR to promote pathological and oncological publishing activity of colleagues in the Central and East European region. The journal will be of interest to pathologists, and a broad range of experimental and clinical oncologists, and related experts. POR is supported by an acknowledged international advisory board and the Arányi Fundation for modern pathology.
期刊最新文献
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