Transcriptome analysis of the moso bamboo pest, Hippotiscus dorsalis, reveals differentially expressed unigenes across various tissues

IF 2.2 2区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Comparative Biochemistry and Physiology D-Genomics & Proteomics Pub Date : 2024-11-05 DOI:10.1016/j.cbd.2024.101354
Mingzhen Zhao , MengJiao Chen , Hong Qiu , Jieyu Wu , Lulu Dai , Shaoyong Zhang
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Abstract

Hippotiscus dorsalis (Hemiptera: Pentatomidae) is a common pest that feeds on the stems of Moso bamboo. Therefore, investigating the molecular processes related to its fundamental physiology is important. In this study, transcriptome sequencing was employed to compare gene expression in different tissues of male and female adults. A total of 36,238 annotated unigenes were identified through the NR database and compared with those of other known species. Among these, Halyomorpha halys and Nezara viridula showed the highest homology with H. dorsalis, with a total similarity exceeding 86 %. The top significant differentially expressed genes were mainly associated with protein digestion, carbohydrates metabolism, as well as reproduce regulation between sexes. The Gene Ontology enrichment analysis across three different segments of each sex revealed some terms associated with detoxification such like IMP biosynthetic process and acetyl-CoA metabolic process. Additionally, Kyoto Encyclopedia of Genes and Genomes enrichment analysis highlighted significant pathways related to glucose metabolism and pancreatic secretion. Further investigation of these DEGs, particularly in the calcium signaling pathway and glycan biosynthesis and metabolism, is essential for understanding sugar metabolism and transport in phytophagous insects.

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毛竹害虫 Hippotiscus dorsalis 的转录组分析揭示了不同组织中差异表达的单基因。
Hippotiscus dorsalis(半翅目:五蠹科)是一种常见害虫,以毛竹的茎为食。因此,研究与其基本生理相关的分子过程非常重要。本研究采用转录组测序比较了雌雄成虫不同组织的基因表达。通过 NR 数据库共鉴定出 36 238 个注释的单基因,并与其他已知物种的单基因进行了比较。其中,Halyomorpha halys 和 Nezara viridula 与 H. dorsalis 的同源性最高,总相似度超过 86%。差异表达最高的基因主要与蛋白质消化、碳水化合物代谢以及两性繁殖调节有关。对每种性别的三个不同区段进行的基因本体富集分析发现了一些与解毒有关的术语,如 IMP 生物合成过程和乙酰-CoA 代谢过程。此外,《京都基因和基因组百科全书》的富集分析突出了与葡萄糖代谢和胰腺分泌有关的重要通路。进一步研究这些 DEGs,特别是钙信号通路和糖生物合成与代谢中的 DEGs,对于了解植食性昆虫的糖代谢和转运至关重要。
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来源期刊
CiteScore
5.10
自引率
3.30%
发文量
69
审稿时长
33 days
期刊介绍: Comparative Biochemistry & Physiology (CBP) publishes papers in comparative, environmental and evolutionary physiology. Part D: Genomics and Proteomics (CBPD), focuses on “omics” approaches to physiology, including comparative and functional genomics, metagenomics, transcriptomics, proteomics, metabolomics, and lipidomics. Most studies employ “omics” and/or system biology to test specific hypotheses about molecular and biochemical mechanisms underlying physiological responses to the environment. We encourage papers that address fundamental questions in comparative physiology and biochemistry rather than studies with a focus that is purely technical, methodological or descriptive in nature.
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