Machine Learned Potential Enables Molecular Dynamics Simulation to Predict the Experimental Branching Ratios in the NO Release Channel of Nitroaromatic Compounds.
Pooja Sharma, Prahlad Roy Chowdhury, Amber Jain, G Naresh Patwari
{"title":"Machine Learned Potential Enables Molecular Dynamics Simulation to Predict the Experimental Branching Ratios in the NO Release Channel of Nitroaromatic Compounds.","authors":"Pooja Sharma, Prahlad Roy Chowdhury, Amber Jain, G Naresh Patwari","doi":"10.1021/acs.jpca.4c04703","DOIUrl":null,"url":null,"abstract":"<p><p>This study employs a machine learning (ML) model using the Gaussian process regression algorithm to generate potential energy surfaces (PES) from density functional theory calculations, facilitating the investigation of photodissociation dynamics of nitroaromatic compounds, resulting in NO release. The experimentally observed trends in the slow-to-fast branching ratios of the NO moiety were captured by estimating the branching ratio between the two distinct reaction pathways, viz., roaming and oxaziridine mechanisms, calculated from molecular dynamics simulations performed on a reduced two-dimensional T<sub>1</sub> surface. The qualitative agreement between the calculated and experimental results suggests that the mechanism dictating NO release is primarily governed by the dynamics on the T<sub>1</sub> surface.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7000,"publicationDate":"2024-11-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry A","FirstCategoryId":"1","ListUrlMain":"https://doi.org/10.1021/acs.jpca.4c04703","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0
Abstract
This study employs a machine learning (ML) model using the Gaussian process regression algorithm to generate potential energy surfaces (PES) from density functional theory calculations, facilitating the investigation of photodissociation dynamics of nitroaromatic compounds, resulting in NO release. The experimentally observed trends in the slow-to-fast branching ratios of the NO moiety were captured by estimating the branching ratio between the two distinct reaction pathways, viz., roaming and oxaziridine mechanisms, calculated from molecular dynamics simulations performed on a reduced two-dimensional T1 surface. The qualitative agreement between the calculated and experimental results suggests that the mechanism dictating NO release is primarily governed by the dynamics on the T1 surface.
本研究采用机器学习(ML)模型,使用高斯过程回归算法,从密度泛函理论计算中生成势能面(PES),从而有助于研究硝基芳香族化合物的光解离动力学,并导致 NO 释放。通过在缩小的二维 T1 表面上进行分子动力学模拟,估算出两种不同反应途径(即漫游机制和恶唑烷机制)之间的分支比,从而捕捉到实验观察到的 NO 分子慢速分支比趋势。计算结果与实验结果的定性一致表明,决定 NO 释放的机制主要受 T1 表面的动力学支配。
期刊介绍:
The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.