Automatic Laplacian-based shape optimization for patient-specific vascular grafts

IF 7 2区 医学 Q1 BIOLOGY Computers in biology and medicine Pub Date : 2024-11-18 DOI:10.1016/j.compbiomed.2024.109308
Milad Habibi , Seda Aslan , Xiaolong Liu , Yue-Hin Loke , Axel Krieger , Narutoshi Hibino , Laura Olivieri , Mark Fuge
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Abstract

Cognitional heart disease is one of the leading causes of mortality among newborns. Tissue-engineered vascular grafts offer the potential to help treat cognitional heart disease through patient-specific vascular grafts. However, current methods often rely on non-personalized designs or involve significant human intervention. This paper presents a computational framework for the automatic shape optimization of patient-specific tissue-engineered vascular grafts for repairing the aortic arch, aimed at reducing the need for manual input and improving current treatment outcomes, which either use non-patient-specific geometry or require extensive human intervention to design the vascular graft. The paper’s core innovation lies in an automatic shape optimization pipeline that combines Bayesian optimization techniques with the open-source finite volume solver, OpenFOAM, and a novel graft deformation algorithm. Specifically, our framework begins with Laplacian mode computation and the approximation of a computationally low-cost Gaussian process surrogate model to capture the minimum weighted combination of inlet-outlet pressure drop (PD) and maximum wall shear stress (WSS). Bayesian Optimization then performs a limited number of OpenFOAM simulations to identify the optimal patient-specific shape.
We use imaging and flow data obtained from six patients diagnosed with cognitional heart disease to evaluate our approach. Our results showcase the potential of online training and hemodynamic surrogate model optimization for providing optimal graft shapes. These results show how our framework successfully reduces inlet-outlet PD and maximum WSS compared to pre-lofted models that include both the native geometry and human-designed grafts. Furthermore, we compare how the performance of each design optimized under steady-state simulation compares to that design’s performance under transient simulation, and to what extent the optimal design remains similar under both conditions. Our findings underscore that the automated designs achieve at least a 16% reduction in blood flow pressure drop in comparison to geometries optimized by humans.
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基于拉普拉奇的自动形状优化技术,用于患者特异性血管移植物
认知性心脏病是新生儿死亡的主要原因之一。组织工程血管移植物有可能通过患者特异性血管移植物帮助治疗认知性心脏病。然而,目前的方法往往依赖于非个性化设计或涉及大量人工干预。本文提出了一个计算框架,用于自动优化修复主动脉弓的患者特异性组织工程血管移植物的形状,旨在减少人工输入的需要,改善目前的治疗效果,这些方法要么使用非患者特异性几何形状,要么需要大量人工干预来设计血管移植物。本文的核心创新在于自动形状优化管道,它将贝叶斯优化技术与开源有限体积求解器 OpenFOAM 和新型移植物变形算法相结合。具体来说,我们的框架从拉普拉斯模式计算和计算成本较低的高斯过程代理模型近似开始,以捕捉入口-出口压降(PD)和最大壁面剪切应力(WSS)的最小加权组合。然后,贝叶斯优化法执行数量有限的 OpenFOAM 仿真,以确定最佳的患者特定形状。我们使用从六名被诊断为认知性心脏病患者处获得的成像和流动数据来评估我们的方法。我们的结果展示了在线训练和血液动力学替代模型优化在提供最佳移植物形状方面的潜力。这些结果表明,与包含原生几何形状和人类设计移植物的预悬浮模型相比,我们的框架如何成功地降低了入口-出口 PD 和最大 WSS。此外,我们还比较了在稳态仿真下优化的每种设计的性能与该设计在瞬态仿真下的性能的比较,以及在这两种条件下优化设计的相似程度。我们的研究结果表明,与人工优化的几何形状相比,自动设计至少能将血流压降降低 16%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
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