Nonequilibrium microbial dynamics unveil a new macroecological pattern beyond Taylor's law.

IF 2.4 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS Physical Review E Pub Date : 2024-10-01 DOI:10.1103/PhysRevE.110.044402
José Camacho-Mateu, Aniello Lampo, Saúl Ares, José A Cuesta
{"title":"Nonequilibrium microbial dynamics unveil a new macroecological pattern beyond Taylor's law.","authors":"José Camacho-Mateu, Aniello Lampo, Saúl Ares, José A Cuesta","doi":"10.1103/PhysRevE.110.044402","DOIUrl":null,"url":null,"abstract":"<p><p>We introduce a comprehensive analytical benchmark, relying on Fokker-Planck formalism, to study microbial dynamics in the presence of both biotic and abiotic forces. In equilibrium, we observe a balance between the two kinds of forces, leading to no correlations between species abundances. This implies that real microbiomes, where correlations have been observed, operate out of equilibrium. Therefore, we analyze nonequilibrium dynamics, presenting an ansatz for an approximate solution that embodies the complex interplay of forces in the system. This solution is consistent with Taylor's law as a coarse-grained approximation of the relation between species abundance and variance, but implies subtler effects, predicting unobserved structure beyond Taylor's law. Motivated by this theoretical prediction, we refine the analysis of existing metagenomic data, unveiling a novel universal macroecological pattern. Finally, we speculate on the physical origin of Taylor's law: building upon an analogy with Brownian motion theory, we propose that Taylor's law emerges as a fluctuation-growth relation resulting from equipartition of environmental resources among microbial species.</p>","PeriodicalId":48698,"journal":{"name":"Physical Review E","volume":"110 4-1","pages":"044402"},"PeriodicalIF":2.4000,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Physical Review E","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1103/PhysRevE.110.044402","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PHYSICS, FLUIDS & PLASMAS","Score":null,"Total":0}
引用次数: 0

Abstract

We introduce a comprehensive analytical benchmark, relying on Fokker-Planck formalism, to study microbial dynamics in the presence of both biotic and abiotic forces. In equilibrium, we observe a balance between the two kinds of forces, leading to no correlations between species abundances. This implies that real microbiomes, where correlations have been observed, operate out of equilibrium. Therefore, we analyze nonequilibrium dynamics, presenting an ansatz for an approximate solution that embodies the complex interplay of forces in the system. This solution is consistent with Taylor's law as a coarse-grained approximation of the relation between species abundance and variance, but implies subtler effects, predicting unobserved structure beyond Taylor's law. Motivated by this theoretical prediction, we refine the analysis of existing metagenomic data, unveiling a novel universal macroecological pattern. Finally, we speculate on the physical origin of Taylor's law: building upon an analogy with Brownian motion theory, we propose that Taylor's law emerges as a fluctuation-growth relation resulting from equipartition of environmental resources among microbial species.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
非平衡微生物动力学揭示了超越泰勒定律的新宏观生态模式。
我们以福克-普朗克形式主义为基础,引入了一个综合分析基准,以研究存在生物和非生物作用力时的微生物动力学。在平衡状态下,我们观察到两种力量之间的平衡,这导致物种丰度之间没有相关性。这就意味着,在实际微生物群落中观察到的相关性是在非均衡状态下运行的。因此,我们分析了非平衡动力学,提出了一个近似解的解析,该解体现了系统中各种力的复杂相互作用。作为物种丰度与变异之间关系的粗粒度近似值,该解法与泰勒定律一致,但意味着更微妙的效应,预测了泰勒定律之外的未观察到的结构。在这一理论预测的推动下,我们完善了对现有元基因组数据的分析,揭示了一种新的普遍宏观生态模式。最后,我们推测了泰勒定律的物理起源:通过与布朗运动理论的类比,我们提出泰勒定律是微生物物种之间环境资源均分所产生的一种波动-生长关系。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
期刊最新文献
Hamiltonian formulation for the motion of an active spheroidal particle suspended in laminar straight duct flow. Higher-order shortest paths in hypergraphs. Correlated internal waves in the nonlocal Ostrovsky equation. Inertial and confined dynamics of a constant-speed active particle in three dimensions. Computational study of erosion and deposition in transient granular flows on an erodible heap.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1