Discovery of potential ferroptosis and osteoporosis biomarkers through TMT proteomics and bioinformatics analysis.

IF 2.9 4区 医学 Q3 ENGINEERING, BIOMEDICAL BioMedical Engineering OnLine Pub Date : 2024-11-23 DOI:10.1186/s12938-024-01307-y
Hui Su, Guoqing Tan, WenXuan Guo, Jin Sheng Yu, Zhanwang Xu, RuJie Zhuang, Haipeng Xue
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Abstract

Background: Primary osteoporosis has increasingly emerged as a major issue affecting human health, with a complex specific pathogenic mechanism. As a research hotspot, ferroptosis plays a vital role in the pathogenesis of primary osteoporosis, aiming to explore the link and specific target genes between ferroptosis and primary osteoporosis.

Methods: By utilizing TMT proteomics and bioinformatics analyses, we elucidated the linkages and key targets of the ferroptosis pathway in an ovariectomized osteoporotic rat model. Forty 12-week-old SD female rats were employed in the study, of which 20 female SD rats were ovariectomized as the OVX group and 20 female SD rats were employed as the SHAM group. At the end of the experiments, the femurs of the rats were excised for computed tomography tests and used for hematoxylin and eosin staining. Finally, we extracted bone tissue proteins for TMT proteomics analysis and protein blotting verification.

Results: The proteomics results of the VX and SHAM groups showed that 133 proteins were significantly changed, of which 91 proteins were upregulated and 42 proteins were downregulated, including TXN, TMSB4X, TFRC, TF, RELA, PARP14, CP, CAPG, and ADIPOQ. The expression of key proteins in the bone tissues was detected by protein blotting. The expression of TFR1, TFRC and TF was upregulated, whereas the expression of Cp, TXN and BMP-2 was downregulated.

Conclusions: TMT proteomics and functional enrichment analyses in our study substantiated that in osteoporosis, disturbances in lipid metabolism lead to the emergence of oxidative stress with iron homeostasis imbalance.

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通过 TMT 蛋白组学和生物信息学分析,发现潜在的铁中毒和骨质疏松症生物标志物。
背景:原发性骨质疏松症日益成为影响人类健康的重大问题,其具体发病机制复杂。作为一个研究热点,铁变态反应在原发性骨质疏松症的发病机制中起着至关重要的作用,旨在探讨铁变态反应与原发性骨质疏松症之间的联系和特异性靶基因:方法:通过TMT蛋白质组学和生物信息学分析,我们阐明了卵巢切除骨质疏松症大鼠模型中铁蛋白沉积通路的联系和关键靶点。研究采用了40只12周龄的SD雌性大鼠,其中20只切除卵巢的SD雌性大鼠为OVX组,20只切除卵巢的SD雌性大鼠为SHAM组。实验结束后,切除大鼠股骨进行计算机断层扫描检测,并进行苏木精和伊红染色。最后,我们提取骨组织蛋白质进行TMT蛋白质组学分析和蛋白质印迹验证:VX组和SHAM组的蛋白质组学结果显示,133个蛋白质发生了显著变化,其中91个蛋白质上调,42个蛋白质下调,包括TXN、TMSB4X、TFRC、TF、RELA、PARP14、CP、CAPG和ADIPOQ。关键蛋白在骨组织中的表达是通过蛋白印迹法检测的。TFR1、TFRC和TF的表达上调,而Cp、TXN和BMP-2的表达下调:我们的研究通过 TMT 蛋白组学和功能富集分析证实,在骨质疏松症中,脂质代谢紊乱会导致氧化应激和铁平衡失调。
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来源期刊
BioMedical Engineering OnLine
BioMedical Engineering OnLine 工程技术-工程:生物医学
CiteScore
6.70
自引率
2.60%
发文量
79
审稿时长
1 months
期刊介绍: BioMedical Engineering OnLine is an open access, peer-reviewed journal that is dedicated to publishing research in all areas of biomedical engineering. BioMedical Engineering OnLine is aimed at readers and authors throughout the world, with an interest in using tools of the physical and data sciences and techniques in engineering to understand and solve problems in the biological and medical sciences. Topical areas include, but are not limited to: Bioinformatics- Bioinstrumentation- Biomechanics- Biomedical Devices & Instrumentation- Biomedical Signal Processing- Healthcare Information Systems- Human Dynamics- Neural Engineering- Rehabilitation Engineering- Biomaterials- Biomedical Imaging & Image Processing- BioMEMS and On-Chip Devices- Bio-Micro/Nano Technologies- Biomolecular Engineering- Biosensors- Cardiovascular Systems Engineering- Cellular Engineering- Clinical Engineering- Computational Biology- Drug Delivery Technologies- Modeling Methodologies- Nanomaterials and Nanotechnology in Biomedicine- Respiratory Systems Engineering- Robotics in Medicine- Systems and Synthetic Biology- Systems Biology- Telemedicine/Smartphone Applications in Medicine- Therapeutic Systems, Devices and Technologies- Tissue Engineering
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