Describing five new strains in the family Woeseiaceae and emended description of the order Woeseiales with genomic features related to environmental adaptation

IF 3.3 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Systematic and applied microbiology Pub Date : 2024-11-20 DOI:10.1016/j.syapm.2024.126563
Feng-Bai Lian , Bing-Jun Zhou , Zi-Yang Zhou , Alejandro P. Rooney , Zhen-Xing Xu , Zong-Jun Du
{"title":"Describing five new strains in the family Woeseiaceae and emended description of the order Woeseiales with genomic features related to environmental adaptation","authors":"Feng-Bai Lian ,&nbsp;Bing-Jun Zhou ,&nbsp;Zi-Yang Zhou ,&nbsp;Alejandro P. Rooney ,&nbsp;Zhen-Xing Xu ,&nbsp;Zong-Jun Du","doi":"10.1016/j.syapm.2024.126563","DOIUrl":null,"url":null,"abstract":"<div><div>The family <em>Woeseiaceae</em>, also known as the JTB255 bacterial group, are ubiquitous and abundant core members of microbial communities in marine surface sediments. However, to date, only one <em>Woeseiaceae</em> strain isolated from marine sediments has been described, and the phylogeny and environmental adaptation mechanisms of this group have been little explored. Here, we isolated five novel <em>Woeseiaceae</em> strains from the marine solar saltern in Weihai, China. Multiple genomic, physiological, and chemotaxonomic characteristics supported that these five isolates represent three novel species within a novel genus, for which <em>Lentisalinibacter</em> gen. nov. and three species <em>Lentisalinibacter sediminis</em> sp. nov., <em>Lentisalinibacter salinarum</em> sp. nov. and <em>Lentisalinibacter orientalis</em> sp. nov. are proposed. Moreover, phylogenetic analysis based on the 16S rRNA genes and genome sequences revealed that <em>Woeseiaceae</em> is most closely related to <em>Steroidobacterales</em>. Further comparative genomics analysis indicated the separate evolution of <em>Woeseiaceae</em> and <em>Steroidobacterales</em>, supporting the emended description of the order <em>Woeseiales</em>. <em>Woeseiales</em> representitives showed facultatively anaerobic characteristics and small genome sizes in contrast to their phylogenetic relatives. They primarily inhabit surface marine sediment environments using multiple metabolic and ecological strategies to adapt to the changing microenvironments. Our results demonstrate the novel representatives of <em>Woeseiales</em> and their environmental adaptation mechanisms in marine environments.</div></div>","PeriodicalId":22124,"journal":{"name":"Systematic and applied microbiology","volume":"48 1","pages":"Article 126563"},"PeriodicalIF":3.3000,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Systematic and applied microbiology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0723202024000778","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

The family Woeseiaceae, also known as the JTB255 bacterial group, are ubiquitous and abundant core members of microbial communities in marine surface sediments. However, to date, only one Woeseiaceae strain isolated from marine sediments has been described, and the phylogeny and environmental adaptation mechanisms of this group have been little explored. Here, we isolated five novel Woeseiaceae strains from the marine solar saltern in Weihai, China. Multiple genomic, physiological, and chemotaxonomic characteristics supported that these five isolates represent three novel species within a novel genus, for which Lentisalinibacter gen. nov. and three species Lentisalinibacter sediminis sp. nov., Lentisalinibacter salinarum sp. nov. and Lentisalinibacter orientalis sp. nov. are proposed. Moreover, phylogenetic analysis based on the 16S rRNA genes and genome sequences revealed that Woeseiaceae is most closely related to Steroidobacterales. Further comparative genomics analysis indicated the separate evolution of Woeseiaceae and Steroidobacterales, supporting the emended description of the order Woeseiales. Woeseiales representitives showed facultatively anaerobic characteristics and small genome sizes in contrast to their phylogenetic relatives. They primarily inhabit surface marine sediment environments using multiple metabolic and ecological strategies to adapt to the changing microenvironments. Our results demonstrate the novel representatives of Woeseiales and their environmental adaptation mechanisms in marine environments.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
描述禾本科(Woeseiaceae)的五个新菌株,并根据与环境适应性相关的基因组特征修订禾本科(Woeseiales)的描述
Woeseiaceae 科,又称 JTB255 细菌群,是海洋表层沉积物中微生物群落中无处不在的丰富核心成员。然而,迄今为止,仅有一株从海洋沉积物中分离出的 Woeseiaceae 菌株被描述过,对该菌群的系统发育和环境适应机制的探索也很少。在此,我们从中国威海的海洋日晒盐场中分离出了五株新的 Woeseiaceae 菌株。通过基因组学、生理学和化学分类学等多方面的特征,我们认为这五个分离株代表了一个新属中的三个新种,并提出了新种Lentisalinibacter gen.和三个新种Lentisalinibacter sediminis sp.nov.、Lentisalinibacter salinarum sp.nov.和Lentisalinibacter orientalis sp.nov.。此外,基于 16S rRNA 基因和基因组序列的系统进化分析表明,Woeseiaceae 与 Steroidobacterales 的亲缘关系最为密切。进一步的比较基因组学分析表明,Woeseiaceae 和 Steroidobacterales 是分开进化的,支持对 Woeseiales 目进行修正描述。与它们的系统发育近亲相比,Woeseiales 的代表物种表现出兼性厌氧特征和较小的基因组规模。它们主要栖息在表层海洋沉积物环境中,利用多种代谢和生态策略来适应不断变化的微环境。我们的研究结果展示了 Woeseiales 的新代表及其在海洋环境中的环境适应机制。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Systematic and applied microbiology
Systematic and applied microbiology 生物-生物工程与应用微生物
CiteScore
7.50
自引率
5.90%
发文量
57
审稿时长
22 days
期刊介绍: Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology:
期刊最新文献
Natronorarus salvus gen. nov., sp. nov., Halalkalicoccus ordinarius sp. nov., and Halalkalicoccus salilacus sp. nov., halophilic archaea from a soda lake and two saline lakes, and proposal to classify the genera Halalkalicoccus and Natronorarus into Halalkalicoccaceae fam. nov. in the order Halobacteriales within the class Halobacteria. Description of Albidovulum litorale sp. nov., Albidovulum marisflavi sp. nov., Albidovulum salinarum sp. nov., and Albidovulum sediminicola sp. nov., and proposal for reclassification of the genus Defluviimonas as a later heterotypic synonym of Albidovulum. Diversity and physiology of abundant Rhodoferax species in global wastewater treatment systems. Description of Hyphococcus formosus sp. nov. and Hyphococcus lacteus sp. nov., isolated from coastal sediment, and reclassification of Marinicaulis flavus as Hyphococcus luteus nom. nov. and Marinicaulis aureus as Hyphococcus aureus comb. nov. Methyloraptor flagellatus gen. Nov., sp. nov., novel Ancalomicrobiaceae-affiliated facultatively methylotrophic bacteria that feed on methanotrophs of the genus Methylococcus
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1