Comprehensive single-cell aging atlas of healthy mammary tissues reveals shared epigenomic and transcriptomic signatures of aging and cancer.

IF 17 Q1 CELL BIOLOGY Nature aging Pub Date : 2024-11-25 DOI:10.1038/s43587-024-00751-8
Brittany L Angarola, Siddhartha Sharma, Neerja Katiyar, Hyeon Gu Kang, Djamel Nehar-Belaid, SungHee Park, Rachel Gott, Giray N Eryilmaz, Mark A LaBarge, Karolina Palucka, Jeffrey H Chuang, Ron Korstanje, Duygu Ucar, Olga Anczukόw
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Abstract

Aging is the greatest risk factor for breast cancer; however, how age-related cellular and molecular events impact cancer initiation is unknown. In this study, we investigated how aging rewires transcriptomic and epigenomic programs of mouse mammary glands at single-cell resolution, yielding a comprehensive resource for aging and cancer biology. Aged epithelial cells exhibit epigenetic and transcriptional changes in metabolic, pro-inflammatory and cancer-associated genes. Aged stromal cells downregulate fibroblast marker genes and upregulate markers of senescence and cancer-associated fibroblasts. Among immune cells, distinct T cell subsets (Gzmk+, memory CD4+, γδ) and M2-like macrophages expand with age. Spatial transcriptomics reveals co-localization of aged immune and epithelial cells in situ. Lastly, we found transcriptional signatures of aging mammary cells in human breast tumors, suggesting possible links between aging and cancer. Together, these data uncover that epithelial, immune and stromal cells shift in proportions and cell identity, potentially impacting cell plasticity, aged microenvironment and neoplasia risk.

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健康乳腺组织的综合单细胞衰老图谱揭示了衰老和癌症的共同表观基因组和转录组特征。
衰老是乳腺癌的最大风险因素;然而,与衰老相关的细胞和分子事件如何影响癌症的发生尚不清楚。在这项研究中,我们以单细胞分辨率研究了衰老如何重写小鼠乳腺的转录组和表观基因组程序,为衰老和癌症生物学提供了全面的资源。衰老的上皮细胞在代谢、促炎症和癌症相关基因方面表现出表观遗传和转录变化。衰老的基质细胞下调成纤维细胞标记基因,上调衰老和癌症相关成纤维细胞标记基因。在免疫细胞中,不同的 T 细胞亚群(Gzmk+、记忆 CD4+、γδ)和 M2 样巨噬细胞随着年龄的增长而扩大。空间转录组学揭示了老化免疫细胞和上皮细胞在原位的共定位。最后,我们在人类乳腺肿瘤中发现了衰老乳腺细胞的转录特征,这表明衰老与癌症之间可能存在联系。这些数据共同揭示了上皮细胞、免疫细胞和基质细胞在比例和细胞特性上的变化,可能会影响细胞的可塑性、衰老的微环境和肿瘤风险。
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Age-related decline in CD8+ tissue resident memory T cells compromises antitumor immunity. Old enlarged nucleoli open the door to the cell's demise. A mortality timer based on nucleolar size triggers nucleolar integrity loss and catastrophic genomic instability. Comprehensive single-cell aging atlas of healthy mammary tissues reveals shared epigenomic and transcriptomic signatures of aging and cancer. Linking ferroptosis to thymic involution.
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