How Accurate Are QM/MM Models?

IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry A Pub Date : 2025-02-13 Epub Date: 2024-12-04 DOI:10.1021/acs.jpca.4c06521
Junming Ho, Haibo Yu, Yihan Shao, Mackenzie Taylor, Junbo Chen
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Abstract

Despite the success and widespread use of QM/MM methods in modeling (bio)chemically important processes, their accuracy is still not well understood. A key reason is because these methods are ultimately approximations to direct QM calculations of very large systems, which are impractical to perform in most cases. We highlight recent progress toward the development of realistic model systems where it is possible to obtain full QM reference data to directly and systematically evaluate the effectiveness of different QM/MM generation schemes. These model systems are highly flexible and can be tailored to probe the sensitivity of a QM/MM model to different reaction types and simulation parameters such as pairing of QM and MM potentials, QM region size, and composition. It is envisaged that this strategy could be used to directly validate different QM/MM generation schemes and spur the development of more robust models in the future.

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QM/MM模型有多准确?
尽管QM/MM方法在(生物)化学重要过程的建模中取得了成功和广泛的应用,但它们的准确性仍然没有得到很好的理解。一个关键的原因是因为这些方法最终是非常大的系统的直接QM计算的近似值,这在大多数情况下是不切实际的。我们强调了现实模型系统发展的最新进展,在这些系统中可以获得完整的QM参考数据,以直接和系统地评估不同QM/MM生成方案的有效性。这些模型系统具有高度的灵活性,可以定制以探测QM/MM模型对不同反应类型和模拟参数(如QM和MM电位的配对,QM区域大小和组成)的灵敏度。可以设想,该策略可用于直接验证不同的QM/MM生成方案,并在未来刺激更健壮的模型的发展。
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来源期刊
The Journal of Physical Chemistry A
The Journal of Physical Chemistry A 化学-物理:原子、分子和化学物理
CiteScore
5.20
自引率
10.30%
发文量
922
审稿时长
1.3 months
期刊介绍: The Journal of Physical Chemistry A is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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Issue Publication Information Issue Editorial Masthead How Accurate Are QM/MM Models? σ-Electrons rather than π-Electrons Inducing Sensitive Nonlinear Optical Responses in Planar and Quasi-Planar Boron Clusters. OH-Detected Aromatic Microsolvation of an Organic NO Radical: Halogenation Controls the Solvation Side.
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