Classical Models of Hydroxide for Proton Hopping Simulations.

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry B Pub Date : 2024-12-12 Epub Date: 2024-12-03 DOI:10.1021/acs.jpcb.4c05499
Ankita Dutta, Themis Lazaridis
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Abstract

Hydronium (H3O+) and hydroxide (OH-) ions perform structural diffusion in water via sequential proton transfers ("Grotthuss hopping"). This phenomenon can be accounted for by interspersing stochastic proton transfer events in classical molecular dynamics simulations. The implementation of OH--mediated proton hopping is particularly challenging because classical force fields are known to produce overcoordinated solvation structures around the OH- ion. Here, we first explore the ability of two-particle point-charge models to reproduce both the solvation free energy and coordination number in TIP3P water. We find that this is possible only with unphysical changes in the nonbonded parameters which create problems in proton hopping simulations. We then construct a classical OH- model with the charge of oxygen distributed among three auxiliary particles. This model favors a lower coordination number by accepting three hydrogen bonds and weakly donating one. The model was implemented in the MOBHY module of the CHARMM program and was fit to reproduce the experimental aqueous diffusion coefficient of OH-. This parameterization gave reasonable electrophoretic mobilities and the expected accelerated transport under nanoconfinement.

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氢氧根质子跳跃模拟的经典模型。
水合氢离子(h30 +)和氢氧化物(OH-)离子通过顺序质子转移(“Grotthuss跳跃”)在水中进行结构扩散。这种现象可以通过经典分子动力学模拟中穿插随机质子转移事件来解释。氢氧根介导的质子跳跃的实现尤其具有挑战性,因为已知经典力场会在氢氧根离子周围产生过配位的溶剂化结构。在这里,我们首先探索了双粒子点电荷模型再现TIP3P水中溶剂化自由能和配位数的能力。我们发现这只有在非键参数发生非物理变化的情况下才有可能,而非键参数在质子跳跃模拟中会产生问题。然后,我们建立了一个经典的氢氧根模型,其中氧的电荷分布在三个辅助粒子中。这个模型通过接受三个氢键和弱提供一个氢键而倾向于较低的配位数。该模型在CHARMM程序的MOBHY模块中实现,适合于再现OH-在水中的实验扩散系数。该参数化给出了合理的电泳迁移率和纳米约束下预期的加速输运。
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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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Issue Editorial Masthead Issue Publication Information A Review of 2025 at The Journal of Physical Chemistry B Effect of Small Molecule Organic Matter on CH4 Adsorption and Desorption Characteristics in Coal. Exploring Diffusion and Aggregation Behaviors in Carbohydrate Solutions.
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