System Genetics Analysis Reveals Sex Differences in Human Aortic Smooth Muscle Gene Expression.

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS Bioinformatics and Biology Insights Pub Date : 2024-11-28 eCollection Date: 2024-01-01 DOI:10.1177/11779322241298592
Sarah L Meng, Rita Anane-Wae, Ernest Diez Benavente, Redouane Aherrahrou
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引用次数: 0

Abstract

Background: Coronary artery disease (CAD) is one of the leading causes of death worldwide. The buildup of atherosclerotic plaque, including lipids and cellular waste, characterizes this disease. Smooth muscle cells (SMCs) can migrate and proliferate to form a fibrous cap that stabilizes the atherosclerotic plaque in response to plaque buildup. However, in some severe cases, the fibrous cap is unable to prevent plaque rupture, which can lead to a thrombotic event causing a stroke or myocardial infarction. Studies have been conducted to identify genes associated with this disease. However, the influence of sex on CAD risk is poorly understood due to the complexity of the disease and the lack of women in clinical studies.

Methods: This study is investigated with a unique collection of human aortic smooth muscle cells (huASMCs) derived from 118 male and 33 female individuals who either underwent a heart transplant or were victims of motor vehicle accidents. In this investigation, we explore differentially expressed genes between males and females related to atherosclerosis using a unique RNAseq dataset of human aortic SMCs.

Results: Our study identified 8 genes (CHST1, DKK2, DLL4, EIF1AXP1, GALNT13, NOTCH4, SELL, SPARCL1) that exhibit sex-biased effects in SMCs. Of these, 6 genes were found in the Athero-Express dataset and 5 of them were associated with atherosclerosis-relevant phenotypes. We discovered a novel NOTCH4/DLL4 pathway that plays a role in the differential expression of these genes between males and females. This pathway is linked to coronary artery physiology and may play a role in the pathophysiology of coronary artery disease that differs between the sexes.

Conclusions: Overall, this investigation shows that differentially expressed genes between males and females in human aortic SMCs exist.

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系统遗传学分析揭示人类主动脉平滑肌基因表达的性别差异。
背景:冠状动脉疾病(CAD)是世界范围内导致死亡的主要原因之一。动脉粥样硬化斑块的积聚,包括脂质和细胞废物,是这种疾病的特征。平滑肌细胞(SMCs)可以迁移和增殖,形成纤维帽,在斑块积聚时稳定动脉粥样硬化斑块。然而,在一些严重的情况下,纤维帽不能防止斑块破裂,这可能导致血栓事件,引起中风或心肌梗死。已经进行了研究,以确定与这种疾病有关的基因。然而,由于疾病的复杂性和临床研究中缺乏女性,性别对CAD风险的影响知之甚少。方法:本研究使用一组独特的人主动脉平滑肌细胞(huASMCs)进行调查,这些细胞来自118名男性和33名女性个体,这些个体要么接受了心脏移植,要么是机动车事故的受害者。在这项研究中,我们使用一个独特的人类主动脉SMCs RNAseq数据集来探索男性和女性之间与动脉粥样硬化相关的差异表达基因。结果:我们的研究确定了8个基因(CHST1, DKK2, DLL4, EIF1AXP1, GALNT13, NOTCH4, SELL, SPARCL1)在SMCs中表现出性别偏性效应。其中,在Athero-Express数据集中发现了6个基因,其中5个与动脉粥样硬化相关表型相关。我们发现了一个新的NOTCH4/DLL4通路,在雄性和雌性之间这些基因的差异表达中起作用。这一途径与冠状动脉生理有关,并可能在冠状动脉疾病的病理生理中发挥作用,而冠状动脉疾病在性别上是不同的。结论:总体而言,本研究表明人类主动脉间质干细胞中存在男性和女性差异表达基因。
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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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