Transcriptome and metabolome revealed the effects of hypoxic environment on ovarian development of Tibetan sheep.

IF 3.4 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Genomics Pub Date : 2025-01-01 Epub Date: 2024-12-03 DOI:10.1016/j.ygeno.2024.110973
Dan Zhang, Chao Yuan, Xuejiao An, Tingting Guo, Zengkui Lu, Jianbin Liu
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Abstract

Many studies on the adaptability of Tibetan sheep to hypoxia have been reported, but little attention has been paid to the reproduction of Tibetan sheep living at an altitude of more than 4000 m. In this study, the ovaries of Alpine Merino sheep (AM) living in middle-high altitude areas (2500 m) and the ovaries of Gangba Tibetan sheep (GB) and Huoba Tibetan sheep (HB) living in ultra-high altitude areas (4400 m or more) were collected. Through morphological, transcriptomics and metabolomics, the effects of ultra-high altitude areas on Tibetan sheep ovarian development and the molecular mechanism of sheep's adaptability to ultra-high altitude environment were explored. The results showed that the number of granulosa cells in AM was significantly higher than that in GB and HB. The transcriptome revealed several genes related to follicular development, such as DAPL1, IGFBP1, C5, GPR12, STRA6, BMPER, etc., which were mainly enriched in related pathways such as cell growth and development. Through metabolomics analysis, it was found that the differential metabolites between the three groups of sheep were mainly lipids and lipid-like small molecules, such as Glycerol 3-Phosphate, PC (16: 0 / 18: 3 (9Z, 12Z, 15Z)), mainly enriched in lipid metabolism and other related pathways. The results of combined analysis showed that Tryptophan metabolism and Steroid hormone biosynthesis may have a significant effect on Tibetan sheep follicular development. Some genes (including HSD17B7, CYP11A1, CYP19, HSD3B1, CYP17, etc.) and some metabolites (including Cortisone, 2-Methoxyestrone, etc.) are enriched in these pathways, regulating ovarian and follicular development by affecting estrogen, progesterone, etc.. The results further revealed the molecular mechanism of Tibetan sheep to adapt to the ultra-high altitude environment and maintain normal ovarian and follicular development through the regulation of genes and metabolites.

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转录组学和代谢组学揭示了缺氧环境对藏羊卵巢发育的影响。
关于藏羊对缺氧适应性的研究已有很多报道,但对海拔4000 m以上的藏羊的繁殖研究却很少。本研究采集了生活在中高海拔地区(2500 m)的高山美利奴羊(AM)的卵巢,以及生活在超高海拔地区(4400 m及以上)的岗巴藏羊(GB)和火巴藏羊(HB)的卵巢。通过形态学、转录组学和代谢组学研究,探讨超高海拔地区对藏羊卵巢发育的影响,以及对超高海拔环境适应的分子机制。结果表明,AM组颗粒细胞数量明显高于GB组和HB组。转录组揭示了几个与卵泡发育相关的基因,如DAPL1、IGFBP1、C5、GPR12、STRA6、BMPER等,这些基因主要富集在细胞生长发育等相关通路中。通过代谢组学分析发现,三组绵羊的差异代谢物主要是脂质和类脂小分子,如甘油3-磷酸、PC (16:0 / 18:3 (9Z、12Z、15Z))等,主要富集于脂质代谢等相关途径。综合分析结果表明,色氨酸代谢和类固醇激素的生物合成可能对藏羊卵泡发育有显著影响。一些基因(包括HSD17B7、CYP11A1、CYP19、HSD3B1、CYP17等)和一些代谢物(包括可的松、2-甲氧基酮等)在这些通路中富集,通过影响雌激素、孕激素等调节卵巢和卵泡发育。结果进一步揭示了藏羊通过基因和代谢物调控适应超高海拔环境,维持卵巢和卵泡正常发育的分子机制。
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来源期刊
Genomics
Genomics 生物-生物工程与应用微生物
CiteScore
9.60
自引率
2.30%
发文量
260
审稿时长
60 days
期刊介绍: Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation. As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.
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