Interplay between Energy and Entropy Mediates Ambimodal Selectivity of Cycloadditions.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-12-24 Epub Date: 2024-12-06 DOI:10.1021/acs.jctc.4c01138
Wook Shin, Yaning Hou, Xin Wang, Zhongyue J Yang
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Abstract

One ambimodal transition state can lead to the formation of multiple products. However, it remains fundamentally unknown how the energy and entropy along the post-TS pathways mediate ambimodal selectivity. Here, we investigated the energy and entropy profiles along the post-TS pathways in four [4 + 2]/[6 + 4] cycloadditions. We observe that the pathway leading to the minor product involves a more pronounced entropic trap. These entropic traps, resulting from the conformational change in the dynamic course of ring closure, act as a reservoir of longer-lived dynamic intermediates that roam on the potential energy surface and have a higher likelihood of redistributing to form the other product. The SpnF-catalyzed Diels-Alder reaction produces [4 + 2] and [6 + 4] adducts with nearly equal product distribution and relatively flat energy profiles, in contrast to other cycloadditions. Unexpectedly, the entropy profiles for these two adducts are distinctly different. The formation of the [6 + 4] adduct encounters an entropic barrier acting as a dynamical bottleneck, while the [4 + 2] adduct involves a substantial entropic trap to maintain long-lived intermediates. These opposing effects hinder both product formations and likely cancel each other out so that an equal product distribution is observed.

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能量和熵之间的相互作用介导了环加成的双峰选择性。
一个双峰过渡态可以导致多种产物的形成。然而,它仍然是根本未知的能量和熵如何沿后ts途径介导双峰选择性。在此,我们研究了四个[4 + 2]/[6 + 4]环加成过程中ts后通路的能量和熵分布。我们观察到,导致次要产物的途径涉及一个更明显的熵陷阱。这些熵阱是由环闭合动态过程中的构象变化引起的,充当了一个长寿命动态中间体的储存库,这些中间体在势能表面漫游,并且具有更高的重新分配形成其他产物的可能性。与其他环加成物相比,spnf催化的Diels-Alder反应产生的[4 + 2]和[6 + 4]加合物具有几乎相等的产物分布和相对平坦的能量分布。出乎意料的是,这两种加合物的熵分布明显不同。[6 + 4]加合物的形成遇到了熵势垒,这是一个动态瓶颈,而[4 + 2]加合物的形成涉及到一个实质性的熵阱,以维持长寿命的中间体。这些相反的效应阻碍了两种产物的形成,并可能相互抵消,从而观察到一个相等的产物分布。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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