Local-Softening Stochastic Surface Walking for Fast Exploration of Corrugated Potential Energy Surfaces.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2024-12-24 Epub Date: 2024-12-05 DOI:10.1021/acs.jctc.4c01081
Tong Guan, Cheng Shang, Zhi-Pan Liu
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Abstract

Global potential energy surface (PES) exploration provides a unique route to predict the thermodynamic and kinetic properties of unknown materials, but the task is highly challenging for systems with tight covalent bonds. Here, we develop the local-softening stochastic surface walking (LS-SSW) method for scanning corrugated PESs. LS-SSW transforms the vibrational mode space of a system by adding pairwise penalty potentials with a self-adaption mechanism, which helps to delocalize and soften the strong local modes. This allows the stochastic surface walking (SSW) method to capture more efficiently the correct local atomic movement toward nearby minima and simultaneously reduce the barrier height of reactions. As a result, the local trapping time in searching for the corrugated PES is greatly reduced. LS-SSW can be applied generally to the reaction pathway sampling and the global PES exploration of both clusters and crystals, the high efficiency of which is demonstrated in searching the reaction pathways between C4H6 isomers, finding the global minimum of carbon clusters up to 360 atoms, and constructing the global PES of Fe7C3 material.

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基于局部软化随机曲面行走的波形势能面快速探测。
全球势能面(PES)勘探为预测未知材料的热力学和动力学性质提供了一种独特的途径,但对于具有紧密共价键的系统来说,这项任务具有很高的挑战性。在此,我们开发了局部软化随机表面行走(LS-SSW)扫描波纹PESs的方法。LS-SSW通过增加具有自适应机制的成对惩罚电位对系统的振动模态空间进行变换,有助于对强局部模态进行离域和软化。这使得随机表面行走(SSW)方法能够更有效地捕获正确的局部原子运动到附近的最小值,同时降低反应的势垒高度。从而大大减少了寻找波纹型PES的局部捕获时间。LS-SSW可以广泛应用于反应路径采样和团簇和晶体的整体PES探索,在C4H6异构体之间的反应路径搜索,寻找360个原子的碳团簇的整体最小值,以及构建Fe7C3材料的整体PES方面表现出高效率。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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