Energy-based bond graph models of glucose transport with SLC transporters.

IF 3.2 3区 生物学 Q2 BIOPHYSICS Biophysical journal Pub Date : 2025-01-21 Epub Date: 2024-12-06 DOI:10.1016/j.bpj.2024.12.006
Peter J Hunter, Weiwei Ai, David P Nickerson
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Abstract

The SLC (solute carrier) superfamily mediates the passive transport of small molecules across apical and basolateral cell membranes in nearly all tissues. In this paper, we employ bond-graph approaches to develop models of SLC transporters that conserve mass, charge, and energy, respectively, and can be parameterized for a specific cell and tissue type for which the experimental kinetic data are available. We show how analytic expressions that preserve thermodynamic consistency can be derived for a representative four- or six-state model, given reasonable assumptions associated with steady-state flux conditions. We present details on fitting parameters for SLC2A2 (a GLUT transporter) and SLC5A1 (an SGLT transporter) to experimental data and show how well the steady-state flux expressions match the full kinetic analysis. Since the bond-graph approach will not be familiar to many readers, we provide a detailed description of the approach and illustrate its application to a number of familiar biophysical processes.

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葡萄糖与SLC转运体的能量键图模型。
在几乎所有的组织中,溶质载体(SLC)超家族介导小分子在根尖和基底外细胞膜上的被动运输。在本文中,我们采用键图方法来开发SLC转运体的模型,这些转运体分别保存质量,电荷和能量,并且可以为特定的细胞和组织类型参数化,其中实验动力学数据可用。我们展示了如何在给定与稳态通量条件相关的合理假设的情况下,为具有代表性的四或六态模型推导出保持热力学一致性的解析表达式。我们详细介绍了SLC2A2(一种GLUT转运体)和SLC5A1(一种SGLT转运体)的参数与实验数据的拟合,并展示了稳态通量表达式与完整动力学分析的匹配程度。由于许多读者不熟悉键图方法,我们提供了该方法的详细描述,并说明了它在许多熟悉的生物物理过程中的应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Biophysical journal
Biophysical journal 生物-生物物理
CiteScore
6.10
自引率
5.90%
发文量
3090
审稿时长
2 months
期刊介绍: BJ publishes original articles, letters, and perspectives on important problems in modern biophysics. The papers should be written so as to be of interest to a broad community of biophysicists. BJ welcomes experimental studies that employ quantitative physical approaches for the study of biological systems, including or spanning scales from molecule to whole organism. Experimental studies of a purely descriptive or phenomenological nature, with no theoretical or mechanistic underpinning, are not appropriate for publication in BJ. Theoretical studies should offer new insights into the understanding ofexperimental results or suggest new experimentally testable hypotheses. Articles reporting significant methodological or technological advances, which have potential to open new areas of biophysical investigation, are also suitable for publication in BJ. Papers describing improvements in accuracy or speed of existing methods or extra detail within methods described previously are not suitable for BJ.
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