Separation of sticker-spacer energetics governs the coalescence of metastable condensates.

IF 3.2 3区 生物学 Q2 BIOPHYSICS Biophysical journal Pub Date : 2024-12-15 DOI:10.1016/j.bpj.2024.12.017
Aniruddha Chattaraj, Eugene I Shakhnovich
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Abstract

Biological condensates often emerge as a multidroplet state and never coalesce into one large droplet within the experimental timespan. Previous work revealed that the sticker-spacer architecture of biopolymers may dynamically stabilize the multidroplet state. Here, we simulate the condensate coalescence using metadynamics approach and reveal two distinct physical mechanisms underlying the fusion of droplets. Condensates made of sticker-spacer polymers readily undergo a kinetic arrest when stickers exhibit slow exchange while fast exchanging stickers at similar levels of saturation allow merger to equilibrium states. On the other hand, condensates composed of homopolymers fuse readily until they reach a threshold density. Increase in entropy upon intercondensate mixing of chains drives the fusion of sticker-spacer chains. We map the range of mechanisms of kinetic arrest from slow sticker exchange dynamics to density mediated in terms of energetic separation of stickers and spacers. Our predictions appear to be in qualitative agreement with recent experiments probing dynamic nature of protein-RNA condensates.

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生物凝聚物通常以多液滴状态出现,在实验时间跨度内从未凝聚成一个大液滴。以前的工作表明,生物聚合物的贴纸-间隔结构可能会动态稳定多液滴状态。在这里,我们使用元动力学方法模拟了凝结物的凝聚过程,并揭示了液滴融合的两种不同物理机制。由贴纸聚合物制成的凝结物在贴纸缓慢交换时很容易发生动力学停滞,而在饱和度相似的情况下,快速交换的贴纸可使凝结物合并到平衡状态。另一方面,由均聚物组成的凝聚体在达到临界密度之前很容易融合。凝集链之间混合时熵的增加推动了贴纸-间隔链的融合。我们绘制了从缓慢的贴纸交换动力学到密度介导的贴纸和间隔物能量分离的动力学阻滞机制范围。我们的预测似乎与最近探测蛋白质-RNA凝聚物动态性质的实验在质量上是一致的。
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来源期刊
Biophysical journal
Biophysical journal 生物-生物物理
CiteScore
6.10
自引率
5.90%
发文量
3090
审稿时长
2 months
期刊介绍: BJ publishes original articles, letters, and perspectives on important problems in modern biophysics. The papers should be written so as to be of interest to a broad community of biophysicists. BJ welcomes experimental studies that employ quantitative physical approaches for the study of biological systems, including or spanning scales from molecule to whole organism. Experimental studies of a purely descriptive or phenomenological nature, with no theoretical or mechanistic underpinning, are not appropriate for publication in BJ. Theoretical studies should offer new insights into the understanding ofexperimental results or suggest new experimentally testable hypotheses. Articles reporting significant methodological or technological advances, which have potential to open new areas of biophysical investigation, are also suitable for publication in BJ. Papers describing improvements in accuracy or speed of existing methods or extra detail within methods described previously are not suitable for BJ.
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