Utility of Brownian dynamics simulations in chemistry and biology: A comprehensive review

IF 2.8 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochimica et biophysica acta. General subjects Pub Date : 2025-02-01 DOI:10.1016/j.bbagen.2024.130740
Karim M. ElSawy
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Abstract

Brownian dynamics (BD) simulations, a powerful computer simulation tool that has gained significant attraction in investigating the intricate dynamics of chemical and biological systems. By meticulously modeling the diffusive motion of molecules and their intricate interactions, BD simulations offer invaluable insights into a diverse array of phenomena, including reaction kinetics, molecular transport, and biomolecular association. This comprehensive review delves into the utility of BD simulations within the realms of chemistry and biology. We meticulously explore the theoretical underpinnings of the technique, critically analyze its strengths and limitations, and showcase its diverse applications across various scientific domains. By providing a comprehensive analysis of the existing literature, we aim to illuminate the potential of BD simulations to significantly advance our understanding of complex chemical and biological systems, ultimately contributing to the development of innovative therapeutic solutions serving a broad range of biomedical applications.
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布朗动力学模拟在化学和生物学中的应用综述。
布朗动力学(BD)模拟是一种强大的计算机模拟工具,在研究化学和生物系统的复杂动力学方面具有重要的吸引力。通过精心模拟分子的扩散运动及其复杂的相互作用,BD模拟提供了对各种现象的宝贵见解,包括反应动力学,分子运输和生物分子结合。这篇全面的综述深入研究了化学和生物学领域内BD模拟的效用。我们精心探索该技术的理论基础,批判性地分析其优势和局限性,并展示其在各个科学领域的不同应用。通过对现有文献的全面分析,我们的目标是阐明BD模拟的潜力,以显著提高我们对复杂化学和生物系统的理解,最终为开发创新的治疗解决方案做出贡献,服务于广泛的生物医学应用。
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来源期刊
Biochimica et biophysica acta. General subjects
Biochimica et biophysica acta. General subjects 生物-生化与分子生物学
CiteScore
6.40
自引率
0.00%
发文量
139
审稿时长
30 days
期刊介绍: BBA General Subjects accepts for submission either original, hypothesis-driven studies or reviews covering subjects in biochemistry and biophysics that are considered to have general interest for a wide audience. Manuscripts with interdisciplinary approaches are especially encouraged.
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