Effect of Viscous Media on the Quantum Yield of Bioluminescence in a Reaction Catalyzed by Bacterial Luciferase

IF 4.033 Q4 Biochemistry, Genetics and Molecular Biology Biophysics Pub Date : 2024-12-20 DOI:10.1134/S0006350924700465
A. E. Lisitsa, L. A. Sukovatyi, V. A. Kratasyuk, E. V. Nemtseva
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Abstract

Based on the data on the transient kinetics of the bioluminescent reaction catalyzed by P. leiognathi luciferase in media with polyols and sugars, the relative quantum yield of bioluminescence in this reaction per substrate molecule was determined using mathematical modeling. It was obtained that in some media the relative quantum yield per aldehyde molecule increases compared to the value in the buffer: by 18 and 33% in the presence of glycerol and sucrose, respectively. Molecular dynamics methods were used to analyze the side-chain conformation of αHis44 – a residue of bacterial luciferases that is known to play an essential role in catalysis. It was found that in the presence of all cosolvents an increased frequency of occurrence of the αHis44 conformation, which is optimal for catalysis, is observed. This effect can contribute to the observed increase in the quantum yield of bioluminescence of the studied reaction in viscous media.

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粘性介质对细菌荧光素酶催化反应中生物发光量子产率的影响
根据P. leiognathi荧光素酶在多元醇和糖介质中催化的生物发光反应的瞬态动力学数据,利用数学模型确定了该反应中每个底物分子的相对发光量子产率。结果表明,在某些介质中,在甘油和蔗糖的存在下,每醛分子的相对量子产率比缓冲液中的值分别增加18%和33%。分子动力学方法用于分析αHis44的侧链构象,αHis44是细菌荧光素酶的残基,已知在催化中起重要作用。结果发现,在所有共溶剂存在的情况下,αHis44构象的出现频率增加,这是催化的最佳构象。这一效应有助于在粘性介质中观察到的生物发光量子产率的增加。
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来源期刊
Biophysics
Biophysics Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
1.20
自引率
0.00%
发文量
67
期刊介绍: Biophysics is a multidisciplinary international peer reviewed journal that covers a wide scope of problems related to the main physical mechanisms of processes taking place at different organization levels in biosystems. It includes structure and dynamics of macromolecules, cells and tissues; the influence of environment; energy transformation and transfer; thermodynamics; biological motility; population dynamics and cell differentiation modeling; biomechanics and tissue rheology; nonlinear phenomena, mathematical and cybernetics modeling of complex systems; and computational biology. The journal publishes short communications devoted and review articles.
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