{"title":"Analysis of biofluid metabolomic profiles to the discovery of biomarkers in age-related macular degeneration.","authors":"Jiali Wu, Min Zhang, Xiaodong Sun","doi":"10.1136/bmjophth-2023-001573","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>Age-related macular degeneration (AMD) is one of the leading causes of irreversible visual impairment and blindness in the elderly. As AMD is a multifactorial disease, it is critical to explore useful biomarkers and pathological pathways underlying it. The purpose of this study is to summarise current metabolic profiles and further identify potential metabolic biomarkers and therapeutic targets in AMD, which could facilitate clinical diagnosis and treatment.</p><p><strong>Methods and analysis: </strong>Relevant metabolomics studies published before 10 December 2021 were generally reviewed from online resources by two investigators. Studies with sufficient information and data were included in this systematic review and repeatedly identified metabolites were extracted. Pathway and Kyoto Encyclopaedia of Genes and Genomes (KEGG) analyses were performed. The public Gene Expression Omnibus (GEO) database was used for coanalysis with differential metabolites to construct a pathway network via MetaboAnalyst V.5.0.</p><p><strong>Results: </strong>16 studies were included in our analysis. 24 metabolites were repeatedly detected and regarded as potential biomarkers for AMD. Pathway analysis implied a major role of phenylalanine, tyrosine and tryptophan pathways in AMD pathology. 11 KEGG pathways were enriched, meanwhile, 11 metabolic pathway clusters were identified by coanalysing the differential metabolites and gene profiles using the GEO database.</p><p><strong>Conclusion: </strong>In this study, we summarised 16 metabolomic studies on AMD, and 24 metabolites were identified as potential biofluid biomarkers. This provided novel insights into the pathogenic mechanisms underlying AMD. Further studies are warranted to validate and expand an effective pattern for AMD diagnosis and treatment.</p>","PeriodicalId":9286,"journal":{"name":"BMJ Open Ophthalmology","volume":"9 1","pages":""},"PeriodicalIF":2.0000,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11683933/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMJ Open Ophthalmology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1136/bmjophth-2023-001573","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"OPHTHALMOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
Objective: Age-related macular degeneration (AMD) is one of the leading causes of irreversible visual impairment and blindness in the elderly. As AMD is a multifactorial disease, it is critical to explore useful biomarkers and pathological pathways underlying it. The purpose of this study is to summarise current metabolic profiles and further identify potential metabolic biomarkers and therapeutic targets in AMD, which could facilitate clinical diagnosis and treatment.
Methods and analysis: Relevant metabolomics studies published before 10 December 2021 were generally reviewed from online resources by two investigators. Studies with sufficient information and data were included in this systematic review and repeatedly identified metabolites were extracted. Pathway and Kyoto Encyclopaedia of Genes and Genomes (KEGG) analyses were performed. The public Gene Expression Omnibus (GEO) database was used for coanalysis with differential metabolites to construct a pathway network via MetaboAnalyst V.5.0.
Results: 16 studies were included in our analysis. 24 metabolites were repeatedly detected and regarded as potential biomarkers for AMD. Pathway analysis implied a major role of phenylalanine, tyrosine and tryptophan pathways in AMD pathology. 11 KEGG pathways were enriched, meanwhile, 11 metabolic pathway clusters were identified by coanalysing the differential metabolites and gene profiles using the GEO database.
Conclusion: In this study, we summarised 16 metabolomic studies on AMD, and 24 metabolites were identified as potential biofluid biomarkers. This provided novel insights into the pathogenic mechanisms underlying AMD. Further studies are warranted to validate and expand an effective pattern for AMD diagnosis and treatment.
目的:老年性黄斑变性(AMD)是老年人不可逆性视力损害和失明的主要原因之一。由于AMD是一种多因素疾病,探索有用的生物标志物和病理通路是至关重要的。本研究的目的是总结当前的代谢谱,进一步确定AMD潜在的代谢生物标志物和治疗靶点,为临床诊断和治疗提供依据。方法和分析:两位研究者从在线资源中对2021年12月10日之前发表的相关代谢组学研究进行了综述。本系统综述纳入了具有足够信息和数据的研究,并提取了反复鉴定的代谢物。进行Pathway和京都基因与基因组百科全书(KEGG)分析。使用公共Gene Expression Omnibus (GEO)数据库,通过MetaboAnalyst V.5.0与差异代谢物进行共分析,构建通路网络。结果:16项研究纳入我们的分析。重复检测24种代谢物,并将其视为AMD的潜在生物标志物。通路分析提示苯丙氨酸、酪氨酸和色氨酸通路在AMD病理中起主要作用。同时,利用GEO数据库对差异代谢物和基因谱进行共分析,鉴定出11个代谢途径簇。结论:在本研究中,我们总结了16项与AMD相关的代谢组学研究,并确定了24种代谢物作为潜在的生物流体生物标志物。这为AMD的致病机制提供了新的见解。需要进一步的研究来验证和扩展AMD诊断和治疗的有效模式。