Performance of a novel viral load assay for plasma HIV-1 RNA quantification compared with Roche real time PCR in China.

IF 2.2 4区 医学 Q3 BIOCHEMICAL RESEARCH METHODS Journal of virological methods Pub Date : 2024-12-24 DOI:10.1016/j.jviromet.2024.115105
Jiaojiao Li, Ruiying He, Yaqing Lin, Pengle Guo, Cong Liu, Xizi Deng, Linghua Li, Yun Lan
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Abstract

The aim of this study was to compare the Sansure HIV-1 VL assay with the Roche Cobas HIV-1 assay in the quantitation of HIV-1 VL and evaluate its application in China. We collected plasma samples from patients infected with HIV-1 or interference patients infected with other viruses. The same samples were subsequently tested using the Sansure HIV-1 VL and Roche Cobas HIV-1 VL assays. Thirty plasma samples from patients not infected with HIV-1 were undetectable using two assays. Overall, agreement was observed for 289 of the 300 samples (96.33 %), with a κ value of 0.92. The Pearson correlation coefficient between the two assays was 0.96. A paired t test revealed no significant difference between the two assays (p = 0.64). Bland-Altman analysis revealed that 97.88 % (185/189) of the paired VLs fell within the 95 % confidence limits of agreement (-0.746-0.768 log10 copies/mL). In particular, the Pearson correlation coefficients for the samples of subtypes CRF01_AE, CRF07_BC, CRF08_BC, and CRF55_01B were 0.98, 0.97, 0.99, and 0.98, respectively. Compared with the Roche Cobas HIV-1 assay, the Sansure HIV-1 VL assay showed good accuracy and linearity and a high correlation, including with HIV subtypes common in China. In addition, the Sansure HIV-1 VL assay is more accessible because of its advantages of price, acquisition and suitability; thus, it can be readily used in China.

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一种新型血浆HIV-1 RNA定量病毒载量测定方法的性能与罗氏实时PCR的比较。
本研究的目的是比较Sansure HIV-1 VL测定法与Roche Cobas HIV-1测定法在HIV-1 VL定量中的应用,并评价其在中国的应用。我们收集了感染HIV-1的患者或感染其他病毒的干扰患者的血浆样本。随后使用Sansure HIV-1 VL和Roche Cobas HIV-1 VL测定法对相同样品进行检测。未感染HIV-1的患者的30份血浆样本用两种方法检测不到。总体而言,300个样本中有289个(96.33%)符合,κ值为0.92。两种检测方法的Pearson相关系数为0.96。配对t检验显示两种分析之间无显著差异(p=0.64)。Bland-Altman分析显示97.88%(185/189)的配对VLs落在一致性的95%置信限内(-0.746 ~ 0.768 log10 copies/mL)。其中,CRF01_AE、CRF07_BC、CRF08_BC和CRF55_01B亚型样本的Pearson相关系数分别为0.98、0.97、0.99和0.98。与Roche Cobas HIV-1检测相比,Sansure HIV-1 VL检测具有良好的准确性和线性,且与中国常见的HIV亚型具有较高的相关性。此外,Sansure HIV-1 VL检测由于其价格、获取和适用性的优势而更容易获得;因此,它可以很容易地在中国使用。
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来源期刊
CiteScore
5.80
自引率
0.00%
发文量
209
审稿时长
41 days
期刊介绍: The Journal of Virological Methods focuses on original, high quality research papers that describe novel and comprehensively tested methods which enhance human, animal, plant, bacterial or environmental virology and prions research and discovery. The methods may include, but not limited to, the study of: Viral components and morphology- Virus isolation, propagation and development of viral vectors- Viral pathogenesis, oncogenesis, vaccines and antivirals- Virus replication, host-pathogen interactions and responses- Virus transmission, prevention, control and treatment- Viral metagenomics and virome- Virus ecology, adaption and evolution- Applied virology such as nanotechnology- Viral diagnosis with novelty and comprehensive evaluation. We seek articles, systematic reviews, meta-analyses and laboratory protocols that include comprehensive technical details with statistical confirmations that provide validations against current best practice, international standards or quality assurance programs and which advance knowledge in virology leading to improved medical, veterinary or agricultural practices and management.
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