Understanding the interaction mechanisms of active compounds extracted from Tabernaemontana penduliflora on the surface of magnetite (111) nanoparticles in aqueous medium by DFT and MD approaches

IF 3 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Journal of molecular graphics & modelling Pub Date : 2024-12-20 DOI:10.1016/j.jmgm.2024.108930
Fredy Harcel Kamgang-Djioko , Christelle Ivane Azambou , Lucresse Kora Nguena Tiomo , Simeon Chukwudozie Nwanonenyi , Georges Kamgang Youbi , Chinyere Ada Madu , Emeka Emmanuel Oguzie
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Abstract

Computational techniques have been used to analyze the molecules of 10-hydroxycoronahydine (HC) and voacangine hydroxyindolenine (VH) molecules with the aim of studying the effect of base and temperature on their interaction mechanisms during synthesis green magnetite nanoparticles. Density functional theory (DFT) descriptors such as: energy gap, overall reactivity descriptors, dipole moment and adsorption energy have all been explored in depth to understand the nature of the interaction. The DFT results showed that the molecules studied (HC and VH) are interactive and stable in an aqueous medium, due to the fact that these molecules have free electronic doublets on the nitrogen atom and the bond of the aromatic ring. It was observed that each molecule effectively increased the stabilization energy of magnetite nanoparticles through electron transfer. According to the Fukui function reactivity results, HC and VH compounds both have high oxidizing powers. Thus, showing that they are good agents for functionalizing magnetite nanoparticles. The adsorption energy and interaction force of HC and VH with the magnetite (111) nanoparticle surface were shown to increase with temperature and depend on the base used. The results of molecular dynamic (MD) simulation demonstrated that the adsorption of molecules on the adsorbate is chemical in nature and that chemical bonds predominate over electrostatic interactions. The molecular dynamics simulation parameters show that the adsorption of 10-hydroxycoronahydine and voacangine hydroxyindolenine molecules is chemisorption, exothermic and spontaneous.

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用离散傅里叶变换和分子动力学方法研究了钟摆草中提取的活性化合物在水介质中磁铁矿(111)纳米颗粒表面的相互作用机理
采用计算方法对10-羟基冠状苯胺(HC)和羟基吲哚胺(VH)分子进行了分析,研究了碱和温度对它们在合成绿色纳米磁铁矿过程中相互作用机理的影响。密度泛函理论(DFT)描述符,如:能隙,总反应性描述符,偶极矩和吸附能都进行了深入的探索,以了解相互作用的性质。DFT结果表明,所研究的分子(HC和VH)在水介质中是相互作用和稳定的,这是由于这些分子在氮原子和芳环的键上具有自由电子重偶。观察到每个分子通过电子转移有效地增加了磁铁矿纳米颗粒的稳定能。根据福井函数反应性结果,HC和VH化合物都具有较高的氧化能力。因此,表明它们是功能化磁铁矿纳米颗粒的良好剂。HC和VH在磁铁矿(111)纳米颗粒表面的吸附能和相互作用力随温度和碱的不同而增大。分子动力学(MD)模拟结果表明,分子在吸附质上的吸附本质上是化学吸附,化学键比静电相互作用更重要。分子动力学模拟参数表明,10-羟基冠状苯胺和羟基吲哚胺分子的吸附是化学吸附、放热吸附和自发吸附。
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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