Mapping two decades of research in rheumatology-specific journals: a topic modeling analysis with BERTopic.

IF 3.4 2区 医学 Q2 RHEUMATOLOGY Therapeutic Advances in Musculoskeletal Disease Pub Date : 2024-12-23 eCollection Date: 2024-01-01 DOI:10.1177/1759720X241308037
Alfredo Madrid-García, Dalifer Freites-Núñez, Beatriz Merino-Barbancho, Inés Pérez Sancristobal, Luis Rodríguez-Rodríguez
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Abstract

Background: Rheumatology has experienced notable changes in the last decades. New drugs, including biologic agents and Janus kinase (JAK) inhibitors, have blossomed. Concepts such as window of opportunity, arthralgia suspicious for progression, or difficult-to-treat rheumatoid arthritis (RA) have appeared; and new management approaches and strategies such as treat-to-target have become popular. Statistical learning methods, gene therapy, telemedicine, or precision medicine are other advancements that have gained relevance in the field. To better characterize the research landscape and advances in rheumatology, automatic and efficient approaches based on natural language processing (NLP) should be used.

Objectives: The objective of this study is to use topic modeling (TM) techniques to uncover key topics and trends in rheumatology research conducted in the last 23 years.

Design: Retrospective study.

Methods: This study analyzed 96,004 abstracts published between 2000 and December 31, 2023, drawn from 34 specialized rheumatology journals obtained from PubMed. BERTopic, a novel TM approach that considers semantic relationships among words and their context, was used to uncover topics. Up to 30 different models were trained. Based on the number of topics, outliers, and topic coherence score, two of them were finally selected, and the topics were manually labeled by two rheumatologists. Word clouds and hierarchical clustering visualizations were computed. Finally, hot and cold trends were identified using linear regression models.

Results: Abstracts were classified into 45 and 47 topics. The most frequent topics were RA, systemic lupus erythematosus, and osteoarthritis. Expected topics such as COVID-19 or JAK inhibitors were identified after conducting dynamic TM. Topics such as spinal surgery or bone fractures have gained relevance in recent years; however, antiphospholipid syndrome or septic arthritis have lost momentum.

Conclusion: Our study utilized advanced NLP techniques to analyze the rheumatology research landscape and identify key themes and emerging trends. The results highlight the dynamic and varied nature of rheumatology research, illustrating how interest in certain topics has shifted over time.

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绘制风湿病专业期刊二十年研究:使用BERTopic进行主题建模分析。
背景:风湿病学在过去几十年经历了显著的变化。包括生物制剂和Janus激酶(JAK)抑制剂在内的新药已经开花结果。出现了机会之窗、可疑进展的关节痛或难以治疗的类风湿关节炎(RA)等概念;新的管理方法和策略,如治疗到目标已经流行起来。统计学习方法、基因治疗、远程医疗或精准医疗是在该领域获得相关的其他进步。为了更好地描述风湿病学的研究前景和进展,应该使用基于自然语言处理(NLP)的自动和有效的方法。目的:本研究的目的是使用主题建模(TM)技术来揭示过去23年来风湿病学研究的关键主题和趋势。设计:回顾性研究。方法:本研究分析了2000年至2023年12月31日期间发表的96,004篇摘要,这些摘要来自PubMed获得的34种风湿病专业期刊。BERTopic是一种新颖的TM方法,它考虑了单词及其上下文之间的语义关系,用于发现主题。训练了多达30个不同的模型。根据主题数量、异常值和主题一致性评分,最终选择其中两个,由两位风湿病学家手工标记主题。计算词云和分层聚类可视化。最后,利用线性回归模型确定冷热趋势。结果:摘要分为45个主题和47个主题。最常见的话题是类风湿性关节炎、系统性红斑狼疮和骨关节炎。在进行动态TM后确定预期主题,如COVID-19或JAK抑制剂。近年来,脊柱外科或骨折等主题已获得相关性;然而,抗磷脂综合征或脓毒性关节炎已失去势头。结论:我们的研究利用了先进的NLP技术来分析风湿病学的研究前景,并确定了关键主题和新兴趋势。结果突出了风湿学研究的动态和多样性,说明了对某些主题的兴趣是如何随着时间的推移而转移的。
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来源期刊
CiteScore
6.80
自引率
4.80%
发文量
132
审稿时长
18 weeks
期刊介绍: Therapeutic Advances in Musculoskeletal Disease delivers the highest quality peer-reviewed articles, reviews, and scholarly comment on pioneering efforts and innovative studies across all areas of musculoskeletal disease.
期刊最新文献
Association between osteoarthritis and cognitive function: results from the NHANES 2011-2014 and Mendelian randomization study. Precision medicine using molecular-target drugs in psoriatic arthritis. Impact of obesity on clinical outcomes and treatment continuation in rheumatoid arthritis patients receiving non-TNF-targeted therapies. Mapping two decades of research in rheumatology-specific journals: a topic modeling analysis with BERTopic. The impact of psoriatic arthritis on quality of life: a systematic review.
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