CatFlow: An Automated Workflow for Training Machine Learning Potentials to Compute Free Energies in Dynamic Catalysis

IF 3.2 3区 化学 Q2 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry C Pub Date : 2024-12-31 DOI:10.1021/acs.jpcc.4c05568
Yun-Pei Liu, Qi-Yuan Fan, Fu-Qiang Gong, Jun Cheng
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Abstract

Dynamic effects of catalysts play a crucial role in catalytic reactions, necessitating the incorporation of statistical sampling and understanding of the impact of dynamic structures in free energy calculations. However, the complexity of catalytic systems poses challenges in effectively exploring the vast configurational space effectively. In this work, we propose CatFlow, an automated workflow for training machine learning potentials (MLPs) to compute free energies of catalytic reactions. CatFlow combines constrained molecular dynamics (MD) simulation with concurrent training of MLPs and sequential calculation of free energies with well trained MLPs. By rapidly generating reliable MLPs, CatFlow facilitates rigorous free energy calculations, enabling the determination of the reaction profiles in an end-to-end manner. We showcased the capabilities of CatFlow by investigating the activation of O2 catalyzed by Pt clusters and demonstrated the effects of phase transition on the activities of the catalytic reaction. CatFlow offers an efficient and automated solution for studying the catalytic elementary reaction processes. It reduces the need for human intervention and provides researchers with a powerful tool to investigate free energies of dynamic catalysis.

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CatFlow:一个用于训练机器学习势来计算动态催化中的自由能的自动化工作流程
催化剂的动态效应在催化反应中起着至关重要的作用,因此需要在自由能计算中纳入统计抽样和了解动态结构的影响。然而,催化体系的复杂性对有效探索广阔的构型空间提出了挑战。在这项工作中,我们提出了CatFlow,一个用于训练机器学习电位(mlp)来计算催化反应自由能的自动化工作流程。CatFlow将约束分子动力学(MD)模拟与mlp的并发训练以及训练良好的mlp的自由能序列计算相结合。通过快速生成可靠的mlp, CatFlow简化了严格的自由能计算,从而能够以端到端方式确定反应曲线。我们通过研究Pt簇对O2的催化活性,展示了CatFlow的能力,并展示了相变对催化反应活性的影响。CatFlow为研究催化基本反应过程提供了一种高效、自动化的解决方案。它减少了人为干预的需要,为研究动态催化的自由能提供了有力的工具。
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来源期刊
The Journal of Physical Chemistry C
The Journal of Physical Chemistry C 化学-材料科学:综合
CiteScore
6.50
自引率
8.10%
发文量
2047
审稿时长
1.8 months
期刊介绍: The Journal of Physical Chemistry A/B/C is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, and chemical physicists.
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