CircRNA profiling reveals the regulatory role of circPAN3 in Hezuo boars Sertoli cell growth.

IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY BMC Genomics Pub Date : 2024-12-30 DOI:10.1186/s12864-024-11170-9
Haixia Shi, Zunqiang Yan, Hong Du, Bo Zhang, Shuangbao Gun
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Abstract

Background: The Hezuo (HZ) pig, a famous indigenous breed in China, is characterized by precocious puberty compared with foreign-introduced pig breeds. Sexual maturation is a complex physiological process, and in recent years, circular RNAs (circRNAs), a new class of noncoding RNAs with endogenous regulatory functions, have been shown to play important roles in regulating sexual maturation. However, the dynamic expression and regulatory mechanism of circRNAs during sexual maturation in HZ pigs remain unclear. In this study, we performed RNA sequencing and bioinformatics analysis to reveal circRNA expression patterns in the testes of HZ boars at 30 days (sexual immaturity; Ha) and 120 days (sexual maturity; Hb), with Landrace (LC) boars of the same age (La and Lb) as controls. Subsequently, an abundant circ_005678 (circPAN3) transcribed from the PAN3 gene, was functionally investigated by RT-qPCR, Western Blot, CCK-8, and flow cytometry.

Results: We identified 31,134 circRNAs in 12 samples, and 2,562, 2,401, 749, and 831 differentially expressed (DE) circRNAs were identified in the Ha-vs-Hb, La-vs-Lb, Ha-vs-La, and Hb-vs-Lb groups, respectively. The results of functional enrichment analyses indicated that these source genes of the DE circRNAs were involved mainly in testicular development and spermatogenesis. Furthermore, we constructed a circRNA-miRNA-mRNA interaction network and functionally analyzed the target genes. GO functional annotation of the target genes suggested that they were mainly involved in biological processes such as gland development, cell proliferation, and reproduction. KEGG pathway analysis further revealed that these genes were enriched mainly in signaling pathways involved in testicular development and spermatogenesis, including the PI3K-Akt and MAPK signaling pathways. Cellular assays revealed that circPAN3 promoted proliferation and inhibited apoptosis in immature Sertoli cells, whereas opposite changes were observed by circPAN3 knockdown.

Conclusions: This study revealed the dynamic expression profiles and regulatory mechanisms of circRNAs during sexual maturation in HZ pigs. Further functional studies demonstrated that circPAN3 promoted the proliferation and inhibited the apoptosis of immature Sertoli cells, suggesting that circPAN3 may be closely related to the characteristics of precocious puberty in HZ boars. These findings provide a new perspective for exploring the regulatory mechanism of circRNAs in precocious puberty in HZ pigs.

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CircRNA分析揭示了circPAN3在合作公猪支持细胞生长中的调节作用。
背景:河左猪(HZ)是中国著名的本土猪种,与国外引进的猪种相比,其性早熟的特点明显。性成熟是一个复杂的生理过程,近年来,环状rna (circular RNAs, circRNAs)这一类具有内源性调控功能的新型非编码rna被发现在性成熟调控中发挥重要作用。然而,在HZ猪的性成熟过程中,circrna的动态表达和调控机制尚不清楚。在这项研究中,我们进行了RNA测序和生物信息学分析,以揭示30天(性不成熟;Ha)和120天(性成熟;Hb),以同日龄(La和Lb)的长白猪(LC)为对照。随后,通过RT-qPCR、Western Blot、CCK-8和流式细胞术研究了从PAN3基因转录的丰富circ_005678 (circPAN3)的功能。结果:我们在12个样本中鉴定出31,134个circrna,在Ha-vs-Hb、La-vs-Lb、Ha-vs-La和Hb-vs-Lb组中分别鉴定出2,562、2,401、749和831个差异表达(DE) circrna。功能富集分析结果表明,这些DE环状rna源基因主要参与睾丸发育和精子发生。此外,我们构建了circRNA-miRNA-mRNA相互作用网络,并对靶基因进行了功能分析。靶基因的氧化石墨烯功能注释表明,它们主要参与腺体发育、细胞增殖和生殖等生物学过程。KEGG通路分析进一步发现,这些基因主要富集于睾丸发育和精子发生的信号通路,包括PI3K-Akt和MAPK信号通路。细胞实验显示,circPAN3促进未成熟Sertoli细胞的增殖并抑制凋亡,而敲低circPAN3则观察到相反的变化。结论:本研究揭示了HZ猪性成熟过程中环状rna的动态表达谱和调控机制。进一步的功能研究表明,circPAN3能够促进未成熟Sertoli细胞的增殖并抑制其凋亡,提示circPAN3可能与HZ公猪性早熟的特征密切相关。这些发现为探索circrna在HZ猪性早熟中的调控机制提供了新的视角。
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来源期刊
BMC Genomics
BMC Genomics 生物-生物工程与应用微生物
CiteScore
7.40
自引率
4.50%
发文量
769
审稿时长
6.4 months
期刊介绍: BMC Genomics is an open access, peer-reviewed journal that considers articles on all aspects of genome-scale analysis, functional genomics, and proteomics. BMC Genomics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all areas of biology and medicine. We offer an efficient, fair and friendly peer review service, and are committed to publishing all sound science, provided that there is some advance in knowledge presented by the work.
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