Comparative analysis of HKTs in six poplar species and functional characterization of PyHKTs in stress-affected tissues.

IF 3.7 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY BMC Genomics Pub Date : 2025-01-07 DOI:10.1186/s12864-025-11203-x
Xiaojiao Liu, Lincui Shi, Hezi Bai, Jing Wang, Anmin Yu, Aizhong Liu, Ping Li
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Abstract

Plant HKTs (High-affinity K+ transporters) are essential transporters for ion transport and homeostasis and play crucial roles in plant growth and stress responses. However, the evolution of HKTs in Populus species and their functions require further investigation. In this study, we identified 16 HKTs from six Populus species. All poplar HKTs were classified as Class I HKTs because of their physiological relationships and the conservation of amino acids in key structures, which aligns with their conserved evolutionary coding sequences. The analysis of the protein domains, motifs and gene structures of 16 poplar HKTs revealed consistent conservation, with the exception of two members. The number of homologs and their chromosome locations indicated the differentiation of HKTs during poplar evolution and adaptation. Poplar HKTs can be classified into two subgroups on the basis of their physiological relationships and distinct protein structures. Gene expression pattern analysis revealed that poplar HKTs presented relatively high expression levels in roots and stems under salt stress. Furthermore, cis-element analysis and protein interaction predictions provide insights into the functions of HKTs under salt stress through the activation of ion transporters, proline content, and ATPases regulated by hormonal signals and MYB transcription factors. In conclusion, our research established a theoretical framework for investigating the evolutionary relationships and functional roles of HKTs in Populus species and offered valuable insights into the functions and underlying mechanisms of poplar HKTs in specific tissues under various stress conditions.

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6种杨树中HKTs的比较分析及应力影响组织中PyHKTs的功能特征。
植物高亲和K+转运蛋白(HKTs)是植物离子转运和体内平衡的重要转运蛋白,在植物生长和逆境响应中起着重要作用。然而,杨树物种中hkt的演化及其功能有待进一步研究。在本研究中,我们从6种杨树中鉴定了16个hkt。所有的杨树HKTs都被归类为一类HKTs,因为它们的生理关系和关键结构中氨基酸的保守性,这与它们保守的进化编码序列一致。对16个杨树HKTs的蛋白结构域、基序和基因结构的分析显示,除了2个HKTs成员外,其余的HKTs都具有一致的保守性。同源物的数量及其染色体位置表明HKTs在杨树进化和适应过程中的分化。杨树HKTs根据其生理关系和不同的蛋白结构可分为两个亚群。基因表达谱分析显示,盐胁迫下杨树HKTs在根和茎中表达量较高。此外,顺式元件分析和蛋白质相互作用预测可以通过激活离子转运体、脯氨酸含量和atp酶(受激素信号和MYB转录因子调节)来深入了解盐胁迫下HKTs的功能。本研究为研究杨树HKTs的进化关系和功能作用建立了理论框架,并对不同胁迫条件下杨树HKTs在特定组织中的功能和机制提供了有价值的见解。
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来源期刊
BMC Genomics
BMC Genomics 生物-生物工程与应用微生物
CiteScore
7.40
自引率
4.50%
发文量
769
审稿时长
6.4 months
期刊介绍: BMC Genomics is an open access, peer-reviewed journal that considers articles on all aspects of genome-scale analysis, functional genomics, and proteomics. BMC Genomics is part of the BMC series which publishes subject-specific journals focused on the needs of individual research communities across all areas of biology and medicine. We offer an efficient, fair and friendly peer review service, and are committed to publishing all sound science, provided that there is some advance in knowledge presented by the work.
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