Improved Description of Environment and Vibronic Effects with Electrostatically Embedded ML Potentials

IF 4.6 2区 化学 Q2 CHEMISTRY, PHYSICAL The Journal of Physical Chemistry Letters Pub Date : 2025-01-13 DOI:10.1021/acs.jpclett.4c02949
Kirill Zinovjev, Carles Curutchet
{"title":"Improved Description of Environment and Vibronic Effects with Electrostatically Embedded ML Potentials","authors":"Kirill Zinovjev, Carles Curutchet","doi":"10.1021/acs.jpclett.4c02949","DOIUrl":null,"url":null,"abstract":"Incorporation of environment and vibronic effects in simulations of optical spectra and excited state dynamics is commonly done by combining molecular dynamics with excited state calculations, which allows to estimate the spectral density describing the frequency-dependent system-bath coupling strength. The need for efficient sampling, however, usually leads to the adoption of classical force fields despite well-known inaccuracies due to the mismatch with the excited state method. Here, we present a multiscale strategy that overcomes this limitation by combining EMLE simulations based on electrostatically embedded ML potentials with the QM/MMPol polarizable embedding model to compute the excited states and spectral density of 3-methyl-indole, the chromophoric moiety of tryptophan that mediates a variety of important biological functions, in the gas phase, in water solution, and in the human serum albumin protein. Our protocol provides highly accurate results that faithfully reproduce their <i>ab initio</i> QM/MM counterparts, thus paving the way for accurate investigations on the interrelation between the time scales of biological motion and the photophysics of tryptophan and other biosystems.","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":"14 1","pages":""},"PeriodicalIF":4.6000,"publicationDate":"2025-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry Letters","FirstCategoryId":"1","ListUrlMain":"https://doi.org/10.1021/acs.jpclett.4c02949","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Incorporation of environment and vibronic effects in simulations of optical spectra and excited state dynamics is commonly done by combining molecular dynamics with excited state calculations, which allows to estimate the spectral density describing the frequency-dependent system-bath coupling strength. The need for efficient sampling, however, usually leads to the adoption of classical force fields despite well-known inaccuracies due to the mismatch with the excited state method. Here, we present a multiscale strategy that overcomes this limitation by combining EMLE simulations based on electrostatically embedded ML potentials with the QM/MMPol polarizable embedding model to compute the excited states and spectral density of 3-methyl-indole, the chromophoric moiety of tryptophan that mediates a variety of important biological functions, in the gas phase, in water solution, and in the human serum albumin protein. Our protocol provides highly accurate results that faithfully reproduce their ab initio QM/MM counterparts, thus paving the way for accurate investigations on the interrelation between the time scales of biological motion and the photophysics of tryptophan and other biosystems.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
用静电嵌入ML电位改进环境和振动效应的描述
在光谱和激发态动力学的模拟中,通常通过将分子动力学与激发态计算相结合来结合环境和振动效应,从而可以估计描述频率相关的系统池耦合强度的光谱密度。然而,由于需要有效的采样,通常导致采用经典力场,尽管众所周知,由于与激发态方法不匹配而导致不准确。在这里,我们提出了一种多尺度策略,通过将基于静电嵌入ML电位的EMLE模拟与QM/MMPol极化嵌入模型相结合,来计算3-甲基吲哚(色氨酸的显色部分,介导多种重要的生物功能)在气相、水溶液和人血清白蛋白中的激发态和光谱密度,从而克服了这一限制。我们的方案提供了高度精确的结果,忠实地再现了从头计算QM/MM对应的结果,从而为准确研究生物运动的时间尺度与色氨酸和其他生物系统的光物理之间的相互关系铺平了道路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
The Journal of Physical Chemistry Letters
The Journal of Physical Chemistry Letters CHEMISTRY, PHYSICAL-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
9.60
自引率
7.00%
发文量
1519
审稿时长
1.6 months
期刊介绍: The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.
期刊最新文献
Machine Learning Accelerated Design of Self-Assembled Monolayers for High-Performance Perovskite Solar Cells. Unveiling Guest Structure and Hydrogen Bonding in Cyclohexanemethanol Clathrate Hydrates. Fast and Efficient Adiabatic Photoisomerization of Linearly Coupled Dithienylethenes. Surface and Bulk Redox Behaviors of CeO2 and Strong Influence of Impurities. Unraveling Scaling Relationships in Dual-Atom Catalysts with Electronic Descriptors: A Machine Learning Investigation for OER/ORR Activity.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1