Random Sampling Versus Active Learning Algorithms for Machine Learning Potentials of Quantum Liquid Water.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-01-28 Epub Date: 2025-01-14 DOI:10.1021/acs.jctc.4c01382
Nore Stolte, János Daru, Harald Forbert, Dominik Marx, Jörg Behler
{"title":"Random Sampling Versus Active Learning Algorithms for Machine Learning Potentials of Quantum Liquid Water.","authors":"Nore Stolte, János Daru, Harald Forbert, Dominik Marx, Jörg Behler","doi":"10.1021/acs.jctc.4c01382","DOIUrl":null,"url":null,"abstract":"<p><p>Training accurate machine learning potentials requires electronic structure data comprehensively covering the configurational space of the system of interest. As the construction of this data is computationally demanding, many schemes for identifying the most important structures have been proposed. Here, we compare the performance of high-dimensional neural network potentials (HDNNPs) for quantum liquid water at ambient conditions trained to data sets constructed using random sampling as well as various flavors of active learning based on query by committee. Contrary to the common understanding of active learning, we find that for a given data set size, random sampling leads to smaller test errors for structures not included in the training process. In our analysis, we show that this can be related to small energy offsets caused by a bias in structures added in active learning, which can be overcome by using instead energy correlations as an error measure that is invariant to such shifts. Still, all HDNNPs yield very similar and accurate structural properties of quantum liquid water, which demonstrates the robustness of the training procedure with respect to the training set construction algorithm even when trained to as few as 200 structures. However, we find that for active learning based on preliminary potentials, a reasonable initial data set is important to avoid an unnecessary extension of the covered configuration space to less relevant regions.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"886-899"},"PeriodicalIF":5.5000,"publicationDate":"2025-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01382","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/14 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Training accurate machine learning potentials requires electronic structure data comprehensively covering the configurational space of the system of interest. As the construction of this data is computationally demanding, many schemes for identifying the most important structures have been proposed. Here, we compare the performance of high-dimensional neural network potentials (HDNNPs) for quantum liquid water at ambient conditions trained to data sets constructed using random sampling as well as various flavors of active learning based on query by committee. Contrary to the common understanding of active learning, we find that for a given data set size, random sampling leads to smaller test errors for structures not included in the training process. In our analysis, we show that this can be related to small energy offsets caused by a bias in structures added in active learning, which can be overcome by using instead energy correlations as an error measure that is invariant to such shifts. Still, all HDNNPs yield very similar and accurate structural properties of quantum liquid water, which demonstrates the robustness of the training procedure with respect to the training set construction algorithm even when trained to as few as 200 structures. However, we find that for active learning based on preliminary potentials, a reasonable initial data set is important to avoid an unnecessary extension of the covered configuration space to less relevant regions.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
量子液态水机器学习势的随机抽样与主动学习算法。
训练准确的机器学习潜力需要全面覆盖感兴趣系统的配置空间的电子结构数据。由于这些数据的构建对计算的要求很高,因此已经提出了许多识别最重要结构的方案。在这里,我们比较了环境条件下量子液态水的高维神经网络电位(HDNNPs)与使用随机抽样构建的数据集以及基于委员会查询的各种类型的主动学习的性能。与对主动学习的普遍理解相反,我们发现对于给定的数据集大小,随机抽样导致不包括在训练过程中的结构的测试误差更小。在我们的分析中,我们表明这可能与主动学习中添加的结构偏差引起的小能量偏移有关,这可以通过使用能量相关性作为对这种变化不变的误差度量来克服。尽管如此,所有的hdnnp都能产生与量子液态水非常相似和精确的结构特性,这证明了训练过程相对于训练集构建算法的鲁棒性,即使训练到的结构只有200个。然而,我们发现,对于基于初始势的主动学习,合理的初始数据集对于避免将覆盖的构型空间不必要地扩展到不相关的区域非常重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
期刊最新文献
Linear-Scaling and Memory-Efficient Implementation of van-der-Waals Interaction (DFT-D3) for Large Systems. Study of Arbitrarily Low Shear Rate Rheology Using Dissipative Particle Dynamics Scalable Distributed Memory Implementation of the Quasi-Adiabatic Propagator Path Integral The Interplay of Pauli Repulsion, Electrostatics, and Field Inhomogeneity for Blueshifting and Redshifting Vibrational Probe Molecules. StochasticGW-GPU: Rapid Quasi-Particle Energies for Molecules beyond 10,000 Atoms.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1