An Integral-Direct GOSTSHYP Algorithm for the Computation of High Pressure Effects on Molecular and Electronic Structure.

IF 5.7 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-01-28 Epub Date: 2025-01-17 DOI:10.1021/acs.jctc.4c01502
Ansgar Pausch, Felix Zeller, Tim Neudecker
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Abstract

To simulate the effects of high pressure on molecular and electronic structure, methods based on the polarizable continuum model have emerged as a serious contender to the conventionally employed periodic boundary conditions. In this work, we present a highly efficient integral-direct algorithm for the Gaussians On Surface Tesserae Simulate HYdrostatic Pressure (GOSTSHYP) method. We examine the efficiency of this implementation on large chains of α-d-glucose units. Furthermore, we investigate the effects of high pressure on the binding energy of a supersystem consisting of a buckminster fullerene and a corannulene pincer system, and juxtapose various types of surfaces that constitute the boundary between the molecule and the implicit solvent. Our efficient implementation of the GOSTSHYP model paves the way for large-scale simulations of molecules under pressure.

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计算高压对分子和电子结构影响的积分-直接GOSTSHYP算法。
为了模拟高压对分子和电子结构的影响,基于极化连续体模型的方法已经成为传统周期性边界条件的有力竞争者。在这项工作中,我们提出了一种高效的高斯表面Tesserae模拟静水压力的积分直接算法(GOSTSHYP)。我们研究了这种在α-d-葡萄糖单元大链上实现的效率。此外,我们研究了高压对由巴克敏斯特富勒烯和环烯钳形体系组成的超体系结合能的影响,并并列了构成分子和隐式溶剂之间边界的各种类型的表面。我们对GOSTSHYP模型的有效实现为压力下分子的大规模模拟铺平了道路。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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