Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea.

IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2025-01-17 DOI:10.1186/s12863-025-01300-x
Min-Kyu Park, Yeong-Jun Park, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, Jae-Ho Shin
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Abstract

Objectives: The data were collected to obtain the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from the rhizosphere of Sasamorpha in a heavy metal-contaminated coal mine in Hongcheon, Republic of Korea. The objective was to explore the strain's genetic potential for plant growth promotion and heavy metal resistance, particularly arsenate and copper. The aim focused on identifying microbes that enhance plant growth in metal-tolerant environments and evaluating the strain's bioremediation and agricultural uses. This study sought key genes for bioremediation and agricultural applications in contaminated soils, aiding sustainable management and biotechnology.

Data description: We report the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from a coal mine in Hongcheon, Republic of Korea. The genome contains a chromosome (4,403,796 bp) and a plasmid (74,326 bp, named pMK-1) with 286-fold coverage. Genome annotation identified 4,209 genes, including 3,926 protein-coding genes, 51 tRNA genes, and 15 rRNA genes, with a G + C content of 66.1%. Functional analysis revealed genes related to plant growth promotion and heavy metal resistance, such as arsenate (arsR, arsC) and copper (copC, copD) resistance genes. Genes involved in auxin biosynthesis suggest potential agricultural applications. The genome and plasmid are available in GenBank (CP041198.1, CP014497.1), offering insights into bioremediation and plant growth in metal-contaminated environments.

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韩国洪川煤矿产假节杆菌sp. NIBRBAC000502770全基因组序列。
目的:收集韩国洪川某重金属污染煤矿Sasamorpha根际分离的假节杆菌sp. NIBRBAC000502770的全基因组序列。目的是探索该菌株促进植物生长和抗重金属(特别是砷酸盐和铜)的遗传潜力。目的集中在鉴定在耐金属环境中促进植物生长的微生物,并评估该菌株的生物修复和农业用途。本研究旨在寻找污染土壤生物修复和农业应用的关键基因,为可持续管理和生物技术提供帮助。数据描述:我们报道了从韩国洪川煤矿分离到的假节杆菌sp. NIBRBAC000502770的全基因组序列。基因组包含一条染色体(4,403,796 bp)和一个质粒(74,326 bp,命名为pMK-1),覆盖286倍。基因组注释鉴定出4209个基因,其中蛋白编码基因3926个,tRNA基因51个,rRNA基因15个,G + C含量为66.1%。功能分析发现了促进植物生长和抗重金属的相关基因,如砷酸盐(arsR, arsC)和铜(copC, copD)抗性基因。参与生长素生物合成的基因具有潜在的农业应用价值。基因组和质粒可在GenBank (CP041198.1, CP014497.1)中获得,为金属污染环境下的生物修复和植物生长提供了见解。
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