Altered Expression of Epigenetic and Transcriptional Regulators in ERβ Knockout Rat Ovaries During Postnatal Development.

IF 4.9 2区 生物学 International Journal of Molecular Sciences Pub Date : 2025-01-17 DOI:10.3390/ijms26020760
Kevin Vo, Yashica Sharma, V Praveen Chakravarthi, Ryan Mohamadi, Elizabeth S Bahadursingh, Amelia Mohamadi, Vinesh Dahiya, Cinthia Y Rosales, Grace J Pei, Patrick E Fields, M A Karim Rumi
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Abstract

We analyzed the transcriptome data of wildtype and estrogen receptor β knockout (ErβKO) rat ovaries during the early postnatal period and detected remarkable changes in epigenetic regulators and transcription factors. Compared with postnatal day (PD) 4.5 ovaries, PD 6.5 wildtype ovaries possessed 581 differentially expressed downstream transcripts (DEDTs), including 17 differentially expressed epigenetic regulators (DEERs) and 23 differentially expressed transcription factors (DETFs). Subsequently, compared with PD 6.5 ovaries, PD 8.5 wildtype ovaries showed 920 DEDTs, including 24 DEERs and 68 DETFs. The DEDTs, DEERs, and DETFs in wildtype ovaries represented the gene expression during primordial follicle activation and the gradual development of primary follicles of first-wave origin because the second-wave follicles remained dormant during this developmental period. When we compared the transcriptome data of age-matched ErβKO ovaries, we observed that PD 6.5 ErβKO ovaries had 744 DEDTs compared with PD 4.5 ovaries, including 46 DEERs and 55 DETFs. The loss of ERβ rapidly activated the primordial follicles of both first- and second-wave origin on PD 6.5 and showed a remarkable increase in DEDTs (744 vs. 581). However, compared with PD 6.5 ovaries, PD 8.5 ErβKO ovaries showed only 191 DEDTs, including 8 DEERs and 10 DETFs. This finding suggests that the PD 8.5 ErβKO ovaries did not undergo remarkable ovarian follicle activation greater than that had already occurred in PD 6.5 ErβKO ovaries. The results also showed that the numbers of DEERs and DETFs were associated with increased changes in DEDTs; the greater the number of DEERs or DETFs, the larger the number of DEDTs. In addition to the quantitative differences in DEERs and DETFs between the wildtype and ErβKO ovaries, the differentially expressed regulators showed distinct patterns. We identified that 17 transcripts were tied to follicle assembly, 6 to follicle activation, and 12 to steroidogenesis. Our observations indicate that a loss of ERβ dysregulates the epigenetic regulators and transcription factors in ErβKO ovaries, which disrupts the downstream genes in ovarian follicles and increases follicle activation. Further studies are required to clarify if ERβ directly or indirectly regulates DEDTs, including DEERs and DETFs, during the neonatal development of rat ovarian follicles.

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ERβ敲除大鼠卵巢后发育过程中表观遗传和转录调控因子的表达改变
我们分析了野生型和雌激素受体β敲除(ErβKO)大鼠卵巢在产后早期的转录组数据,发现表观遗传调控因子和转录因子发生了显著变化。与PD 4.5相比,PD 6.5野生型卵巢具有581个差异表达下游转录本(DEDTs),其中包括17个差异表达表观遗传调控因子(DEERs)和23个差异表达转录因子(detf)。随后,与PD 6.5卵巢相比,PD 8.5野生型卵巢显示920个dedt,其中deer 24个,detf 68个。野生型卵巢中的DEDTs、DEERs和detf代表了原始卵泡激活和第一波起源的初级卵泡逐渐发育过程中的基因表达,因为第二波卵泡在这一发育时期处于休眠状态。当我们比较年龄匹配的ErβKO卵巢的转录组数据时,我们观察到PD 6.5 ErβKO卵巢与PD 4.5卵巢相比有744个DEDTs,包括46个DEERs和55个detf。ERβ的缺失在PD 6.5时迅速激活了第一波和第二波起源的原始卵泡,并显示出DEDTs显著增加(744比581)。与PD 6.5卵巢相比,PD 8.5 ErβKO卵巢仅显示191个DEDTs,其中DEERs 8个,detf 10个。这一发现表明PD 8.5 ErβKO卵巢没有发生比PD 6.5 ErβKO卵巢更显著的卵泡激活。结果还表明,deer和detf的数量与dedt的变化增加有关;deer或detf的数量越多,dedt的数量也越多。除了野生型和ErβKO卵巢DEERs和detf的数量差异外,差异表达的调节因子表现出不同的模式。我们发现17个转录本与卵泡组装有关,6个与卵泡激活有关,12个与甾体生成有关。我们的观察结果表明,ERβ的缺失会使ERβ ko卵巢中的表观遗传调控因子和转录因子失调,从而破坏卵巢卵泡中的下游基因,增加卵泡的激活。在大鼠卵巢卵泡的新生发育过程中,ERβ是否直接或间接调节DEERs和detf,还需要进一步的研究来阐明。
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期刊介绍: The International Journal of Molecular Sciences (ISSN 1422-0067) provides an advanced forum for chemistry, molecular physics (chemical physics and physical chemistry) and molecular biology. It publishes research articles, reviews, communications and short notes. Our aim is to encourage scientists to publish their theoretical and experimental results in as much detail as possible. Therefore, there is no restriction on the length of the papers or the number of electronics supplementary files. For articles with computational results, the full experimental details must be provided so that the results can be reproduced. Electronic files regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material (including animated pictures, videos, interactive Excel sheets, software executables and others).
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