{"title":"Computational Modeling of Electrocatalysts for CO<sub>2</sub> Reduction: Probing the Role of Primary, Secondary, and Outer Coordination Spheres.","authors":"Christina M Zeng, Julien A Panetier","doi":"10.1021/acs.accounts.4c00631","DOIUrl":null,"url":null,"abstract":"<p><p>ConspectusIn the search for efficient and selective electrocatalysts capable of converting greenhouse gases to value-added products, enzymes found in naturally existing bacteria provide the basis for most approaches toward electrocatalyst design. Ni,Fe-carbon monoxide dehydrogenase (Ni,Fe-CODH) is one such enzyme, with a nickel-iron-sulfur cluster named the C-cluster, where CO<sub>2</sub> binds and is converted to CO at high rates near the thermodynamic potential. In this Account, we divide the enzyme's catalytic contributions into three categories based on location and function. We also discuss how computational techniques provide crucial insight into implementing these findings in homogeneous CO<sub>2</sub> reduction electrocatalysis design principles. The CO<sub>2</sub> binding sites (e.g., Ni and \"unique\" Fe ion) along with the ligands that support it (e.g., iron-sulfur cluster) form the primary coordination sphere. This is replicated in molecular electrocatalysts via the metal center and ligand framework where the substrate binds. This coordination sphere has a direct impact on the electronic configuration of the catalyst. By computationally modeling a series of Ni and Co complexes with bipyridyl-<i>N</i>-heterocyclic carbene ligand frameworks of varying degrees of planarity, we were able to closely examine how the primary coordination sphere controls the product distribution between CO and H<sub>2</sub> for these catalysts. The secondary coordination sphere (SCS) of Ni,Fe-CODH contains residues proximal to the active site pocket that provide hydrogen-bonding stabilizations necessary for the reaction to proceed. Enhancing the SCS when synthesizing new catalysts involves substituting functional groups onto the ligand for direct interaction with the substrate. To analyze the endless possible substitutions, computational techniques are ideal for deciphering the intricacies of substituent effects, as we demonstrated with an array of imidazolium-functionalized Mn and Re bipyridyl tricarbonyl complexes. By examining how the electrostatic interactions between the ligand, substrate, and proton source lowered activation energy barriers, we determined how best to pinpoint the SCS additions. The outer coordination sphere comprises the remaining parts of Ni,Fe-CODH, such as the elaborate protein matrix, solvent interactions, and remote metalloclusters. The challenge in elucidating and replicating the role of the vast protein matrix has understandably led to a localized focus on the primary and secondary coordination spheres. However, certain portions of Ni,Fe-CODH's expansive protein scaffold are suggested to be catalytically relevant despite considerable distance from the active site. Closer studies of these relatively overlooked areas of nature's exceptionally proficient catalysts may be crucial to continually improve upon electrocatalysis protocols. Mechanistic analysis of cobalt phthalocyanines (CoPc) immobilized onto carbon nanotubes (CoPc/CNT) reveals how the active site microenvironment and outer coordination sphere effects unlock the CoPc molecule's previously inaccessible intrinsic catalytic ability to convert CO<sub>2</sub> to MeOH. Our research suggests that incorporating the three coordination spheres in a holistic approach may be vital for advancing electrocatalysis toward viability in mitigating climate disruption. Computational methods allow us to closely examine transition states and determine how to minimize key activation energy barriers.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":" ","pages":"342-353"},"PeriodicalIF":17.7000,"publicationDate":"2025-02-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.accounts.4c00631","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/27 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0
Abstract
ConspectusIn the search for efficient and selective electrocatalysts capable of converting greenhouse gases to value-added products, enzymes found in naturally existing bacteria provide the basis for most approaches toward electrocatalyst design. Ni,Fe-carbon monoxide dehydrogenase (Ni,Fe-CODH) is one such enzyme, with a nickel-iron-sulfur cluster named the C-cluster, where CO2 binds and is converted to CO at high rates near the thermodynamic potential. In this Account, we divide the enzyme's catalytic contributions into three categories based on location and function. We also discuss how computational techniques provide crucial insight into implementing these findings in homogeneous CO2 reduction electrocatalysis design principles. The CO2 binding sites (e.g., Ni and "unique" Fe ion) along with the ligands that support it (e.g., iron-sulfur cluster) form the primary coordination sphere. This is replicated in molecular electrocatalysts via the metal center and ligand framework where the substrate binds. This coordination sphere has a direct impact on the electronic configuration of the catalyst. By computationally modeling a series of Ni and Co complexes with bipyridyl-N-heterocyclic carbene ligand frameworks of varying degrees of planarity, we were able to closely examine how the primary coordination sphere controls the product distribution between CO and H2 for these catalysts. The secondary coordination sphere (SCS) of Ni,Fe-CODH contains residues proximal to the active site pocket that provide hydrogen-bonding stabilizations necessary for the reaction to proceed. Enhancing the SCS when synthesizing new catalysts involves substituting functional groups onto the ligand for direct interaction with the substrate. To analyze the endless possible substitutions, computational techniques are ideal for deciphering the intricacies of substituent effects, as we demonstrated with an array of imidazolium-functionalized Mn and Re bipyridyl tricarbonyl complexes. By examining how the electrostatic interactions between the ligand, substrate, and proton source lowered activation energy barriers, we determined how best to pinpoint the SCS additions. The outer coordination sphere comprises the remaining parts of Ni,Fe-CODH, such as the elaborate protein matrix, solvent interactions, and remote metalloclusters. The challenge in elucidating and replicating the role of the vast protein matrix has understandably led to a localized focus on the primary and secondary coordination spheres. However, certain portions of Ni,Fe-CODH's expansive protein scaffold are suggested to be catalytically relevant despite considerable distance from the active site. Closer studies of these relatively overlooked areas of nature's exceptionally proficient catalysts may be crucial to continually improve upon electrocatalysis protocols. Mechanistic analysis of cobalt phthalocyanines (CoPc) immobilized onto carbon nanotubes (CoPc/CNT) reveals how the active site microenvironment and outer coordination sphere effects unlock the CoPc molecule's previously inaccessible intrinsic catalytic ability to convert CO2 to MeOH. Our research suggests that incorporating the three coordination spheres in a holistic approach may be vital for advancing electrocatalysis toward viability in mitigating climate disruption. Computational methods allow us to closely examine transition states and determine how to minimize key activation energy barriers.
在寻找能够将温室气体转化为增值产品的高效和选择性电催化剂的过程中,在自然存在的细菌中发现的酶为大多数电催化剂设计方法提供了基础。Ni, fe -一氧化碳脱氢酶(Ni,Fe-CODH)就是这样一种酶,它的镍-铁-硫簇被命名为c簇,在这里CO2结合并以接近热力学势的高速率转化为CO。在这篇文章中,我们根据位置和功能将酶的催化作用分为三类。我们还讨论了计算技术如何为在均相二氧化碳还原电催化设计原则中实现这些发现提供重要见解。二氧化碳的结合位点(例如,Ni和“独特的”Fe离子)以及支持它的配体(例如,铁硫簇)形成初级配位球。这在分子电催化剂中通过金属中心和底物结合的配体框架进行复制。这个配位球对催化剂的电子构型有直接的影响。通过计算模拟一系列具有不同平面度联吡啶- n -杂环碳配体框架的Ni和Co配合物,我们能够仔细研究初级配位球如何控制这些催化剂Co和H2之间的产物分布。Ni,Fe-CODH的二级配位球(SCS)含有靠近活性位点口袋的残基,这些残基为反应的进行提供了必要的氢键稳定。在合成新催化剂时,增强SCS需要将官能团取代到配体上以与底物直接相互作用。为了分析无穷无尽的可能取代,计算技术是破译取代基效应的复杂性的理想选择,正如我们用咪唑功能化Mn和Re联吡啶三羰基配合物阵列所证明的那样。通过研究配体、底物和质子源之间的静电相互作用如何降低活化能垒,我们确定了如何最好地确定SCS添加。外配位球由Ni、Fe-CODH的剩余部分组成,如精细的蛋白质基质、溶剂相互作用和远端金属团簇。在阐明和复制巨大的蛋白质基质的作用方面所面临的挑战可以理解地导致了对初级和次级协调领域的局部关注。然而,Ni,Fe-CODH的膨胀蛋白支架的某些部分被认为是催化相关的,尽管距离活性位点相当远。对这些相对被忽视的自然界中异常精通的催化剂领域进行更深入的研究,可能是不断改进电催化协议的关键。对固定在碳纳米管(CoPc/CNT)上的酞菁钴(CoPc)的机理分析揭示了活性位点微环境和外配位球效应如何解锁CoPc分子以前无法获得的将CO2转化为MeOH的内在催化能力。我们的研究表明,将这三个协调领域结合在一个整体的方法中,对于推进电催化在减轻气候破坏方面的可行性至关重要。计算方法允许我们仔细检查过渡状态,并确定如何最小化关键活化能势垒。
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.