The value of a metabolic and immune-related gene signature and adjuvant therapeutic response in pancreatic cancer.

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY Frontiers in Genetics Pub Date : 2025-01-03 eCollection Date: 2024-01-01 DOI:10.3389/fgene.2024.1475378
Danlei Ni, Jiayi Wu, Jingjing Pan, Yajing Liang, Zihui Xu, Zhiying Yan, Kequn Xu, Feifei Wei
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Abstract

Background: Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive malignancy characterized by a dismal prognosis. Treatment outcomes exhibit substantial variability across patients, underscoring the urgent need for robust predictive models to effectively estimate survival probabilities and therapeutic responses in PDAC.

Methods: Metabolic and immune-related genes exhibiting differential expression were identified using the TCGA-PDAC and GTEx datasets. A genetic prognostic model was developed via univariable Cox regression analysis on a training cohort. Predictive accuracy was assessed using Kaplan-Meier (K-M) curves, calibration plots, and ROC curves. Additional analyses, including GSAE and immune cell infiltration studies, were conducted to explore relevant biological mechanisms and predict therapeutic efficacy.

Results: An 8-gene prognostic model (AK2, CXCL11, TYK2, ANGPT4, IL20RA, MET, ENPP6, and CA12) was established. Three genes (AK2, ENPP6, and CA12) were associated with metabolism, while the others were immune-related. Most genes correlated with poor prognosis. Validation in TCGA-PDAC and GSE57495 datasets demonstrated robust performance, with AUC values for 1-, 3-, and 5-year OS exceeding 0.7. The model also effectively predicted responses to adjuvant therapy.

Conclusion: This 8-gene signature enhances prognostic accuracy and therapeutic decision-making in PDAC, offering valuable insights for clinical applications and personalized treatment strategies.

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胰腺癌代谢和免疫相关基因特征与辅助治疗反应的价值。
背景:胰腺导管腺癌(PDAC)是一种高度侵袭性的恶性肿瘤,预后差。治疗结果在不同患者之间表现出很大的差异,强调迫切需要强大的预测模型来有效地估计PDAC的生存概率和治疗反应。方法:使用TCGA-PDAC和GTEx数据集鉴定代谢和免疫相关基因的差异表达。通过对训练队列进行单变量Cox回归分析,建立遗传预后模型。采用Kaplan-Meier (K-M)曲线、校正图和ROC曲线评估预测准确性。其他分析包括GSAE和免疫细胞浸润研究,以探索相关的生物学机制并预测治疗效果。结果:建立了8个基因(AK2、CXCL11、TYK2、ANGPT4、IL20RA、MET、ENPP6、CA12)的预后模型。三个基因(AK2, ENPP6和CA12)与代谢相关,而其他基因与免疫相关。大多数基因与预后不良相关。在TCGA-PDAC和GSE57495数据集上的验证显示出稳健的性能,1年、3年和5年OS的AUC值超过0.7。该模型还能有效预测对辅助治疗的反应。结论:这一8基因标记提高了PDAC的预后准确性和治疗决策,为临床应用和个性化治疗策略提供了有价值的见解。
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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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