Comparative Analysis of Spacer Targets in CRISPR-Cas Systems of Starter Cultures.

IF 2 4区 生物学 Q4 CELL BIOLOGY Acta Naturae Pub Date : 2024-10-01 DOI:10.32607/actanaturae.27533
A A Fatkulin, T A Chuksina, N P Sorokina, I T Smykov, E V Kuraeva, E S Masezhnaya, K A Smagina, M Yu Shkurnikov
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Abstract

Dairy production facilities represent a unique ecological niche for bacteriophages of lactic acid bacteria. Throughout evolution, bacteria have developed a wide range of defense mechanisms against viral infections caused by bacteriophages. The CRISPR-Cas system is of particular interest due to its adaptive nature. It allows bacteria to acquire and maintain specific resistance to certain bacteriophages. In this study, we investigated the CRISPR-Cas systems of lactic acid bacteria. Special attention was paid to the specificity of the spacers in CRISPR cassettes. CRISPR-Cas systems were found in the genomes of 43% of the lactic acid bacteria studied. Additionally, only 13.1% of the total number of CRISPR cassette spacers matched bacteriophage genomes, indicating that many predicted spacers either lack known phage targets or are directed against other types of mobile genetic elements, such as plasmids.

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发酵剂CRISPR-Cas系统中间隔靶点的比较分析。
乳制品生产设施为乳酸菌噬菌体提供了一个独特的生态位。在整个进化过程中,细菌已经发展出广泛的防御机制来抵御由噬菌体引起的病毒感染。由于其适应性,CRISPR-Cas系统特别令人感兴趣。它使细菌获得并保持对某些噬菌体的特异性抗性。在这项研究中,我们研究了乳酸菌的CRISPR-Cas系统。特别注意的是CRISPR卡带中间隔物的特异性。研究人员在43%的乳酸菌基因组中发现了CRISPR-Cas系统。此外,只有13.1%的CRISPR盒式间隔物与噬菌体基因组匹配,这表明许多预测的间隔物要么缺乏已知的噬菌体靶点,要么针对其他类型的可移动遗传元件,如质粒。
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来源期刊
Acta Naturae
Acta Naturae 农林科学-林学
CiteScore
3.50
自引率
5.00%
发文量
0
审稿时长
>12 weeks
期刊介绍: Acta Naturae is an international journal on life sciences based in Moscow, Russia. Our goal is to present scientific work and discovery in molecular biology, biochemistry, biomedical disciplines and biotechnology. These fields represent the most important priorities for the research and engineering development both in Russia and worldwide. Acta Naturae is also a periodical for those who are curious in various aspects of biotechnological business, innovations in pharmaceutical areas, intellectual property protection and social consequences of scientific progress. The journal publishes analytical industrial surveys focused on the development of different spheres of modern life science and technology. Being a radically new and totally unique journal in Russia, Acta Naturae is useful to both representatives of fundamental research and experts in applied sciences.
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