Improving the Reliability of, and Confidence in, DFT Functional Benchmarking through Active Learning.

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Chemical Theory and Computation Pub Date : 2025-02-25 Epub Date: 2025-02-02 DOI:10.1021/acs.jctc.4c01729
Javier E Alfonso-Ramos, Carlo Adamo, Éric Brémond, Thijs Stuyver
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Abstract

Validating the performance of exchange-correlation functionals is vital to ensure the reliability of density functional theory (DFT) calculations. Typically, these validations involve benchmarking data sets. Currently, such data sets are usually assembled in an unprincipled manner, suffering from uncontrolled chemical bias, and limiting the transferability of benchmarking results to a broader chemical space. In this work, a data-efficient solution based on active learning is explored to address this issue. Focusing─as a proof of principle─on pericyclic reactions, we start from the BH9 benchmarking data set and design a chemical reaction space around this initial data set by combinatorially combining reaction templates and substituents. Next, a surrogate model is trained to predict the standard deviation of the activation energies computed across a selection of 20 distinct DFT functionals. With this model, the designed chemical reaction space is explored, enabling the identification of challenging regions, i.e., regions with large DFT functional divergence, for which representative reactions are subsequently acquired as additional training points. Remarkably, it turns out that the function mapping the molecular structure to functional divergence is readily learnable; convergence is reached upon the acquisition of fewer than 100 reactions. With our final updated model, a more challenging─and arguably more representative─pericyclic benchmarking data set is curated, and we demonstrate that the functional performance has changed significantly compared to the original BH9 subset.

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通过主动学习提高DFT功能基准测试的可靠性和可信度。
验证交换相关泛函的性能对于保证密度泛函理论(DFT)计算的可靠性至关重要。通常,这些验证涉及对数据集进行基准测试。目前,这些数据集通常以一种无原则的方式组装,受到不受控制的化学偏差的影响,并且限制了基准测试结果在更广泛的化学领域的可转移性。在这项工作中,我们探索了一种基于主动学习的数据高效解决方案来解决这个问题。作为对周环反应的原理证明,我们从BH9基准数据集开始,通过组合反应模板和取代基,围绕这个初始数据集设计了一个化学反应空间。接下来,训练代理模型来预测通过选择20个不同的DFT泛函计算的活化能的标准偏差。利用该模型,探索设计的化学反应空间,从而识别具有挑战性的区域,即具有较大DFT功能散度的区域,随后获得代表性反应作为额外的训练点。值得注意的是,将分子结构映射到功能发散的函数是很容易学习的;当获得少于100个反应时达到收敛。在我们最终更新的模型中,我们整理了一个更具挑战性──也可以说更具代表性──的周循环基准测试数据集,我们证明,与最初的BH9子集相比,功能性能发生了显著变化。
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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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