Transition metal complexes of N-furfuryl-N′-benzoylthiourea: A study of synthesis, antibacterial activities, quantum chemical calculations and molecular modeling simulations

IF 2.6 3区 化学 Q2 CHEMISTRY, INORGANIC & NUCLEAR Polyhedron Pub Date : 2025-02-01 DOI:10.1016/j.poly.2024.117357
Canan Avşar , Bahar Tuba Findik , Bülent Dede , Mukadder Erdem-Tuncmen , Fatma Karipcin
{"title":"Transition metal complexes of N-furfuryl-N′-benzoylthiourea: A study of synthesis, antibacterial activities, quantum chemical calculations and molecular modeling simulations","authors":"Canan Avşar ,&nbsp;Bahar Tuba Findik ,&nbsp;Bülent Dede ,&nbsp;Mukadder Erdem-Tuncmen ,&nbsp;Fatma Karipcin","doi":"10.1016/j.poly.2024.117357","DOIUrl":null,"url":null,"abstract":"<div><div>The biological activity of acylthiourea compounds, which interact with biological systems due to their molecular structure and redox properties, is generally enhanced when converted to metal complexes. A novel series of five complexes with the formula of Na[ML<sub>2</sub>(N<sub>3</sub>)X] [M = Co(II) <strong>(1)</strong>, Ni(II) <strong>(2)</strong>, Cu(II) <strong>(3)</strong>] and K[ML<sub>2</sub>(SCN)] [M = Ni(II) (<strong>4</strong>), Cu(II) (<strong>5</strong>)] were synthesized using <em>N</em>-furfuryl-N’-benzoylthiourea (HL) with the aim of developing<!--> <!-->potential antibacterial reagents. The structure of the complexes was elucidated using elemental analysis, IR spectroscopy, thermal analysis, as well as molar conductance, and magnetic measurements. The results indicated that the <em>N</em>-furfuryl-N<strong>′</strong>-benzoylthiourea ligand behaves as a monobasic bidentate SO ligand. The antibacterial activity of the complexes was evaluated against Gram (+) and Gram (−) bacteria. The copper(II) complexes showed the highest antibacterial activity. Quantum chemical calculations of the complexes were performed at the DFT/B3LYP level of theory using the LANL2DZ basis set, which includes the effective core potentials for metal atoms, and the 6-311G(d,p) basis set for non-metal atoms. The geometric parameters, molecular electrostatic potential diagrams, total density of states and frontier molecular orbitals of each complex were calculated. Molecular docking simulation demonstrated the interactions of the compounds with two selected enzymes, β-ketoacyl-ACP synthase III, and lipoteichoic acid synthase, key enzymes for bacterial survival. Based on the binding energies, copper(II) complex had the best antibacterial activity. The best binding energy was between complex 5 and 1HNJ with an energy value of −9.2 kcal/mol. Molecular dynamics simulations confirmed the stability of the Complex 5-1HNJ couple under physiological conditions.</div></div>","PeriodicalId":20278,"journal":{"name":"Polyhedron","volume":"267 ","pages":"Article 117357"},"PeriodicalIF":2.6000,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Polyhedron","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0277538724005333","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, INORGANIC & NUCLEAR","Score":null,"Total":0}
引用次数: 0

Abstract

The biological activity of acylthiourea compounds, which interact with biological systems due to their molecular structure and redox properties, is generally enhanced when converted to metal complexes. A novel series of five complexes with the formula of Na[ML2(N3)X] [M = Co(II) (1), Ni(II) (2), Cu(II) (3)] and K[ML2(SCN)] [M = Ni(II) (4), Cu(II) (5)] were synthesized using N-furfuryl-N’-benzoylthiourea (HL) with the aim of developing potential antibacterial reagents. The structure of the complexes was elucidated using elemental analysis, IR spectroscopy, thermal analysis, as well as molar conductance, and magnetic measurements. The results indicated that the N-furfuryl-N-benzoylthiourea ligand behaves as a monobasic bidentate SO ligand. The antibacterial activity of the complexes was evaluated against Gram (+) and Gram (−) bacteria. The copper(II) complexes showed the highest antibacterial activity. Quantum chemical calculations of the complexes were performed at the DFT/B3LYP level of theory using the LANL2DZ basis set, which includes the effective core potentials for metal atoms, and the 6-311G(d,p) basis set for non-metal atoms. The geometric parameters, molecular electrostatic potential diagrams, total density of states and frontier molecular orbitals of each complex were calculated. Molecular docking simulation demonstrated the interactions of the compounds with two selected enzymes, β-ketoacyl-ACP synthase III, and lipoteichoic acid synthase, key enzymes for bacterial survival. Based on the binding energies, copper(II) complex had the best antibacterial activity. The best binding energy was between complex 5 and 1HNJ with an energy value of −9.2 kcal/mol. Molecular dynamics simulations confirmed the stability of the Complex 5-1HNJ couple under physiological conditions.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
n -糠酰- n′-苯甲酰硫脲过渡金属配合物的合成、抗菌活性、量子化学计算和分子模拟模拟研究
酰基硫脲类化合物由于其分子结构和氧化还原性质与生物系统相互作用,其生物活性通常在转化为金属配合物时得到增强。以n -糠酰基n′-苯甲酰硫脲(HL)为原料,合成了一系列新的5种配合物,其分子式为Na[ML2(N3)X] [M = Co(II) (1), Ni(II) (2), Cu(II)(3)]和K[ML2(SCN)] [M = Ni(II) (4), Cu(II)(5)]。配合物的结构通过元素分析、红外光谱、热分析、摩尔电导和磁测量来阐明。结果表明,n -糠酰- n′-苯甲酰硫脲配体表现为单碱双齿SO配体。研究了配合物对革兰氏(+)菌和革兰氏(−)菌的抑菌活性。铜(II)配合物抗菌活性最高。配合物的量子化学计算在DFT/B3LYP理论水平上进行,使用LANL2DZ基集,其中包括金属原子的有效核心势,以及非金属原子的6-311G(d,p)基集。计算了各配合物的几何参数、分子静电势图、总态密度和前沿分子轨道。分子对接模拟证明了化合物与两种选定的酶相互作用,β-酮酰基acp合成酶III和脂磷胆酸合成酶是细菌生存的关键酶。从结合能来看,铜(II)配合物的抗菌活性最好。配合物5与1HNJ之间的结合能最好,能量值为−9.2 kcal/mol。分子动力学模拟证实了配合物5-1HNJ对在生理条件下的稳定性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Polyhedron
Polyhedron 化学-晶体学
CiteScore
4.90
自引率
7.70%
发文量
515
审稿时长
2 months
期刊介绍: Polyhedron publishes original, fundamental, experimental and theoretical work of the highest quality in all the major areas of inorganic chemistry. This includes synthetic chemistry, coordination chemistry, organometallic chemistry, bioinorganic chemistry, and solid-state and materials chemistry. Papers should be significant pieces of work, and all new compounds must be appropriately characterized. The inclusion of single-crystal X-ray structural data is strongly encouraged, but papers reporting only the X-ray structure determination of a single compound will usually not be considered. Papers on solid-state or materials chemistry will be expected to have a significant molecular chemistry component (such as the synthesis and characterization of the molecular precursors and/or a systematic study of the use of different precursors or reaction conditions) or demonstrate a cutting-edge application (for example inorganic materials for energy applications). Papers dealing only with stability constants are not considered.
期刊最新文献
First-row transition metal complexes with pyridine-benzothiazole and hexafluoroacetylacetonate ligands: supramolecular insights and biological effects Effect of alkyl chain architecture on diglycolamide complexation with uranyl ion: Insights from spectroscopy, calorimetry, and DFT Water-stable cobalt(II) coordination polymer and its fluorescence turn-off sensing towards Cr₂O₇2− and 3-nitrotyrosine in aqueous solution Selective americium recovery from high level waste: demonstration of hydrophilic BTP enabled 1-cycle actinide partitioning Editorial Board
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1