Vertex-Edge-Weighted Molecular Graphs: A Study on Topological Indices and Their Relevance to Physicochemical Properties of Drugs Used in Cancer Treatment.

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2025-02-24 Epub Date: 2025-02-03 DOI:10.1021/acs.jcim.4c02013
Sezer Sorgun, Kahraman Birgin
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Abstract

Quantitative structure-property relationship (QSPR) analysis plays a crucial role in predicting physicochemical properties and biological activities of pharmaceutical compounds, aiding in drug design and optimization. This study focuses on leveraging QSPR within the framework of vertex and edge-weighted (VEW) molecular graphs, exploring their significance in drug research. By examining 48 drugs used in the treatment of various cancers and their physicochemical properties, previous studies serve as a foundation for our research. Introducing a novel methodology for computing vertex and edge weights, we highlight the importance of considering atomic properties and interbond dynamics. Statistical analysis, employing linear regression models, reveals enhanced correlations between topological indices and the physicochemical properties of drugs. Comparison with previous studies on unweighted molecular graphs highlights the enhancements achieved with our approach.

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顶点边缘加权分子图:拓扑指数及其与癌症治疗药物理化性质相关性的研究。
定量构效关系(QSPR)分析在预测药物的理化性质和生物活性,帮助药物设计和优化方面起着至关重要的作用。本研究的重点是在顶点和边加权(VEW)分子图的框架内利用QSPR,探讨其在药物研究中的意义。通过对48种用于治疗各种癌症的药物及其理化性质的研究,为我们的研究提供了基础。介绍了一种计算顶点和边权的新方法,强调了考虑原子性质和键间动力学的重要性。采用线性回归模型进行统计分析,发现拓扑指标与药物理化性质之间的相关性增强。与以前对未加权分子图的研究比较,突出了我们的方法所取得的增强。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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