On the number of equal-letter runs of the bijective Burrows-Wheeler transform

IF 1 4区 计算机科学 Q3 COMPUTER SCIENCE, THEORY & METHODS Theoretical Computer Science Pub Date : 2025-02-19 Epub Date: 2024-11-28 DOI:10.1016/j.tcs.2024.115004
Elena Biagi , Davide Cenzato , Zsuzsanna Lipták , Giuseppe Romana
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Abstract

The Bijective Burrows-Wheeler Transform (BBWT) is a variant of the famous BWT [Burrows and Wheeler, 1994]. The BBWT was introduced by Gil and Scott in 2012, and is based on the extended BWT of Mantaci et al. [TCS 2007] and on the Lyndon factorization of the input string. In the original paper, the compression achieved with the BBWT was shown to be competitive with that of the BWT, and it has been gaining interest in recent years. In this work, we present the first study of the number rB of runs of the BBWT, which is a measure of its compression power. We exhibit an infinite family of strings on which rB of the string and of its reverse differ by a multiplicative factor of Θ(logn), where n is the length of the string. We also give several theoretical results on the BBWT, including a characterization of binary strings for which the BBWT has two runs. Finally, we present experimental results and statistics on rB(s) and rB(srev), as well as on the number of Lyndon factors in the Lyndon factorization of s and srev.
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关于双射Burrows-Wheeler变换的等字母运行次数
双射Burrows-Wheeler变换(Bijective Burrows-Wheeler Transform, BBWT)是著名的BWT的一个变体[Burrows and Wheeler, 1994]。BBWT是由Gil和Scott在2012年引入的,它基于Mantaci等人[TCS 2007]的扩展BWT和输入字符串的Lyndon分解。在最初的论文中,用BBWT实现的压缩被证明与BWT的压缩具有竞争力,并且近年来得到了人们的关注。在这项工作中,我们首次研究了BBWT的运行次数rB,这是衡量其压缩能力的一种方法。我们展示了一个无限的弦族,其中弦的rB和它的逆的rB相差一个乘因子Θ(log ln n),其中n是弦的长度。我们还给出了关于BBWT的几个理论结果,包括BBWT有两次运行的二进制字符串的表征。最后,我们给出了rB(s)和rB(srev)的实验结果和统计数据,以及s和srev的林登因子分解中林登因子的数量。
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来源期刊
Theoretical Computer Science
Theoretical Computer Science 工程技术-计算机:理论方法
CiteScore
2.60
自引率
18.20%
发文量
471
审稿时长
12.6 months
期刊介绍: Theoretical Computer Science is mathematical and abstract in spirit, but it derives its motivation from practical and everyday computation. Its aim is to understand the nature of computation and, as a consequence of this understanding, provide more efficient methodologies. All papers introducing or studying mathematical, logic and formal concepts and methods are welcome, provided that their motivation is clearly drawn from the field of computing.
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