Rongen Yan, Ping An, Xianghao Meng, Yakun Li, Dongmei Li, Fu Xu, Depeng Dang
{"title":"A knowledge graph for crop diseases and pests in China.","authors":"Rongen Yan, Ping An, Xianghao Meng, Yakun Li, Dongmei Li, Fu Xu, Depeng Dang","doi":"10.1038/s41597-025-04492-0","DOIUrl":null,"url":null,"abstract":"<p><p>A standardized representation and sharing of crop disease and pest data is crucial for enhancing crop yields, especially in China, which features vast cultivation areas and complex agricultural ecosystems. A knowledge graph for crop diseases and pests, acting as a repository of entities and relationships, is crucial conceptually for achieving unified data management. However, there is currently a lack of knowledge graphs specifically designed for this field. In this paper, we propose CropDP-KG, a knowledge graph for crop diseases and pests in China, which leverages natural language processing techniques to analyze data from the Chinese crop diseases and pests image-text database. CropDP-KG covers relevant information on crop diseases and pests in China, featuring 8 primary entities such as diseases, symptoms, and crops, and is organized into 7 relationships such as primary occurrence locations, affected parts and suitable temperature. In total, it includes 13,840 entities and 21,961 relationships. In the case studies presented in this research, we also show a versatile application of CropDP, namely a knowledge service system, and have released its codebase under an open-source license. The content of this paper provides a guide for users to build their own knowledge graphs, aiming to help them effectively reuse and extend the knowledge graphs they create.</p>","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"222"},"PeriodicalIF":5.8000,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11802884/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Scientific Data","FirstCategoryId":"103","ListUrlMain":"https://doi.org/10.1038/s41597-025-04492-0","RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0
Abstract
A standardized representation and sharing of crop disease and pest data is crucial for enhancing crop yields, especially in China, which features vast cultivation areas and complex agricultural ecosystems. A knowledge graph for crop diseases and pests, acting as a repository of entities and relationships, is crucial conceptually for achieving unified data management. However, there is currently a lack of knowledge graphs specifically designed for this field. In this paper, we propose CropDP-KG, a knowledge graph for crop diseases and pests in China, which leverages natural language processing techniques to analyze data from the Chinese crop diseases and pests image-text database. CropDP-KG covers relevant information on crop diseases and pests in China, featuring 8 primary entities such as diseases, symptoms, and crops, and is organized into 7 relationships such as primary occurrence locations, affected parts and suitable temperature. In total, it includes 13,840 entities and 21,961 relationships. In the case studies presented in this research, we also show a versatile application of CropDP, namely a knowledge service system, and have released its codebase under an open-source license. The content of this paper provides a guide for users to build their own knowledge graphs, aiming to help them effectively reuse and extend the knowledge graphs they create.
期刊介绍:
Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data.
The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.