Active Ornstein-Uhlenbeck model for bacterial heat engines.

IF 2.4 3区 物理与天体物理 Q2 PHYSICS, FLUIDS & PLASMAS Physical Review E Pub Date : 2024-12-01 DOI:10.1103/PhysRevE.110.064609
Roland Wiese, Klaus Kroy, Viktor Holubec
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Abstract

We use Brownian dynamics simulations to study a model of a cyclic bacterial heat engine based on a harmonically confined colloidal probe particle in a bath formed by active Brownian particles. For intermediate activities, active noise experienced by large enough probes becomes Gaussian with exponential autocorrelation function. We show that, in this experimentally pertinent regime, the probability densities for stochastic work, heat, and efficiency are well represented by those of a single active Ornstein-Uhlenbeck particle (AOUP), effectively representing the whole many-body setup. Due to the probe's fast relaxation in the potential, in typical experimental implementations, good agreement can prevail even when the autocorrelation function of the active noise develops nonexponential tails. Our results show that the AOUP provides a convenient and accurate, analytically tractable effective model to mimic and analyze experimental bacterial heat engines, especially when operating with comparatively large probes and stiff traps.

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细菌热机的主动Ornstein-Uhlenbeck模型。
我们利用布朗动力学模拟研究了一种循环细菌热机的模型,该模型是基于活跃布朗粒子形成的浴槽中谐波约束的胶体探针粒子。对于中间活动,足够大的探针所经历的有源噪声变为具有指数自相关函数的高斯噪声。我们表明,在这个实验相关的制度下,随机功、热和效率的概率密度很好地代表了单个活跃的Ornstein-Uhlenbeck粒子(AOUP)的概率密度,有效地代表了整个多体设置。由于探针在电位中的快速弛豫,在典型的实验实现中,即使有源噪声的自相关函数发展为非指数尾,也可以取得很好的一致性。结果表明,AOUP为模拟和分析实验细菌热机提供了一个方便、准确、易于分析的有效模型,特别是在使用较大探针和刚性陷阱的情况下。
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来源期刊
Physical Review E
Physical Review E PHYSICS, FLUIDS & PLASMASPHYSICS, MATHEMAT-PHYSICS, MATHEMATICAL
CiteScore
4.50
自引率
16.70%
发文量
2110
期刊介绍: Physical Review E (PRE), broad and interdisciplinary in scope, focuses on collective phenomena of many-body systems, with statistical physics and nonlinear dynamics as the central themes of the journal. Physical Review E publishes recent developments in biological and soft matter physics including granular materials, colloids, complex fluids, liquid crystals, and polymers. The journal covers fluid dynamics and plasma physics and includes sections on computational and interdisciplinary physics, for example, complex networks.
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