Creating Better Brewing Yeast With the 1011 Yeast Genomes Data Sets.

IF 2.2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Yeast Pub Date : 2025-02-15 DOI:10.1002/yea.3990
Kristoffer Krogerus, Nils Rettberg
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Abstract

Yeast strain development has been essential for improving efficiency, flavour diversity, and quality of beer fermentation. Such efforts often rely on laborious in vitro screening experiments. However, with the increasing availability of large-scale 'omics' data sets, it may be possible to replace or complement such experiments with in silico screening. Compared to more traditional in vitro screening, this has several benefits, including lower costs, more rapid results and possibility to include more strains. Here, we briefly review the genetics associated with various desirable and undesirable traits in brewing yeast, and demonstrate how recent genomics, transcriptomics, and proteomics data sets derived from the 1011 yeast genomes project can be exploited for identifying strains with potentially desirable phenotypes. The discussed phenotypes are related to fermentation performance, formation of desirable flavours, and mitigation of off-flavours. Finally, we perform wort fermentations with five strains from diverse backgrounds, with diverse predicted phenotypes, to validate the in silico predictions. Most predicted phenotypes correlated well with the measured phenotypes, including formation of desirable compounds like isoamyl acetate and ethyl octanoate, as well as formation of undesirable compounds like 4-vinyl guaiacol, diacetyl, and ethanethiol. Together, the results indicate that utilising large 'omics' data sets can be a very useful tool for both strain selection and development for beer fermentation, and naturally other food and beverage fermentations as well. We hope this can inspire and yield improved and more diverse brewing strains to the industry.

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酵母菌株的开发对于提高啤酒发酵的效率、风味多样性和质量至关重要。这些工作通常依赖于费力的体外筛选实验。然而,随着大规模 "omics "数据集的日益普及,我们有可能用硅学筛选来取代或补充这些实验。与更传统的体外筛选相比,这有几个好处,包括成本更低、结果更快,而且可以纳入更多菌株。在此,我们简要回顾了与酿酒酵母各种理想和不理想性状相关的遗传学,并展示了如何利用最近从 1011 酵母基因组项目中获得的基因组学、转录组学和蛋白质组学数据集来鉴定具有潜在理想表型的菌株。所讨论的表型与发酵性能、理想风味的形成和异味的减轻有关。最后,我们用五种来自不同背景、具有不同预测表型的菌株进行麦汁发酵,以验证硅学预测。大多数预测的表型与测量的表型有很好的相关性,包括乙酸异戊酯和辛酸乙酯等理想化合物的形成,以及 4-乙烯基愈创木酚、双乙酰基和乙硫醇等不良化合物的形成。总之,这些结果表明,利用大型 "全息 "数据集是一种非常有用的工具,既可用于啤酒发酵的菌种选择和开发,也可用于其他食品和饮料发酵。我们希望这能为酿酒业带来启发,使酿酒菌株得到改良并更加多样化。
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来源期刊
Yeast
Yeast 生物-生化与分子生物学
CiteScore
5.30
自引率
3.80%
发文量
55
审稿时长
3 months
期刊介绍: Yeast publishes original articles and reviews on the most significant developments of research with unicellular fungi, including innovative methods of broad applicability. It is essential reading for those wishing to keep up to date with this rapidly moving field of yeast biology. Topics covered include: biochemistry and molecular biology; biodiversity and taxonomy; biotechnology; cell and developmental biology; ecology and evolution; genetics and genomics; metabolism and physiology; pathobiology; synthetic and systems biology; tools and resources
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