Transcriptomics reveals preterm birth risk: identification and validation of key genes in monocytes.

Abstract

Background: Preterm birth (PTB) is a leading cause of neonatal mortality and long-term disability worldwide. However, the molecular mechanisms underlying PTB remain incompletely understood, and the etiology of many PTB cases is still largely unexplained. Due to their close association with PTB, monocytes serve as an ideal matrix for identifying peripheral biomarkers predictive of preterm birth risk.

Objective: This study aims to identify and validate biomarkers that could predict PTB, improving clinical diagnostic accuracy and enhancing preventive measures against PTB.

Methods: This study conducted a comprehensive transcriptomic analysis of monocytes obtained from PTB patients (gestational age = 28-36 weeks) and age-matched healthy controls (HC, gestational age = 37^+ 1-41^+ 4 weeks). Blood samples were collected within 30 min of hospital admission and prior to labor initiation to ensure consistency. We further validated the findings after screening for potential biomarkers using quantitative real-time PCR (qPCR). While the sample size was relatively small, this study provides foundational evidence supporting the role of CXCL3 and IL-6 as biomarkers for PTB, laying a framework for future prospective research.

Results: We identified 295 significantly differentially expressed genes compared to the control group, and Weighted Gene Co-expression Network Analysis (WGCNA) further revealed genes significantly associated with PTB. These genes are involved in immune pathways such as rheumatoid arthritis, influenza A, and the MAPK signaling pathway. Machine learning analysis and qPCR validation identified two essential genes-CXCL3 and IL-6. Based on these two genes, the diagnostic model achieved an AUC value of 1 in the discovery cohort, distinguishing PTB patients from healthy controls.

Conclusion: The immune responses observed in peripheral blood mononuclear cells (PBMCs) may be closely related to the mechanisms underlying PTB. Monocyte-derived genes CXCL3 and IL-6 are promising biomarkers for predicting PTB risk, offering new diagnostic tools for clinical practice. These findings have the potential to enhance PTB prevention and management strategies.