Visualizing Methane-Cycling Microbial Dynamics in Coastal Wetlands.

IF 1.2 4区 综合性期刊 Q3 MULTIDISCIPLINARY SCIENCES Jove-Journal of Visualized Experiments Pub Date : 2025-01-31 DOI:10.3791/67715
Shahida Ferdousee, Mohammad Sadman Alam, Myung Hwangbo, Jongsun Kim
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Abstract

Coastal wetlands are the largest biotic source of methane, where methanogens convert organic matter into methane and methanotrophs oxidize methane, thus playing a critical role in regulating the methane cycle. The wetlands in South Texas, which are subject to frequent weather events, fluctuating salinity levels, and anthropogenic activities due to climate change, influence methane cycling. Despite the ecological importance of these processes, methane cycling in South Texas coastal wetlands remains insufficiently explored. To address this gap, we developed and optimized a method for detecting genes related to methanogens and methanotrophs, including mcrA as a biomarker for methanogens and pmoA1, pmoA2, and mmoX as biomarkers for methanotrophs. Additionally, this study aimed to visualize the spatial and temporal distribution patterns of methanogen and methanotroph abundance utilizing the geographic information system (GIS) software ArcGIS Pro. The integration of these molecular techniques with advanced geospatial visualization provided critical insights into the spatial and temporal distribution of methanogen and methanotroph communities across South Texas wetlands. Thus, the methodology established in this study offers a robust framework for mapping microbial dynamics in wetlands, enhancing our understanding of methane cycling under varying environmental conditions, and supporting broader ecological and environmental change studies.

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海岸带湿地甲烷循环微生物动态可视化研究
滨海湿地是最大的甲烷生物来源,产甲烷菌将有机物转化为甲烷,甲烷氧化菌氧化甲烷,在调节甲烷循环中起着关键作用。南德克萨斯州的湿地受到频繁的天气事件、盐度水平波动和气候变化引起的人为活动的影响,影响着甲烷的循环。尽管这些过程具有重要的生态意义,但南德克萨斯州沿海湿地的甲烷循环仍未得到充分探索。为了弥补这一空白,我们开发并优化了一种检测产甲烷菌和甲烷氧化菌相关基因的方法,包括mcrA作为产甲烷菌的生物标志物,pmoA1、pmoA2和mmoX作为甲烷氧化菌的生物标志物。利用地理信息系统(GIS)软件ArcGIS Pro对产甲烷菌和富甲烷菌丰度的时空分布格局进行可视化分析。将这些分子技术与先进的地理空间可视化技术相结合,为南德克萨斯湿地产甲烷菌和产甲烷营养菌群落的时空分布提供了重要的见解。因此,本研究中建立的方法为绘制湿地微生物动态提供了一个强大的框架,增强了我们对不同环境条件下甲烷循环的理解,并支持更广泛的生态和环境变化研究。
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来源期刊
Jove-Journal of Visualized Experiments
Jove-Journal of Visualized Experiments MULTIDISCIPLINARY SCIENCES-
CiteScore
2.10
自引率
0.00%
发文量
992
期刊介绍: JoVE, the Journal of Visualized Experiments, is the world''s first peer reviewed scientific video journal. Established in 2006, JoVE is devoted to publishing scientific research in a visual format to help researchers overcome two of the biggest challenges facing the scientific research community today; poor reproducibility and the time and labor intensive nature of learning new experimental techniques.
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