Discovery of a first-in-class PROTAC degrader of histone lysine demethylase KDM4

IF 5.9 2区 医学 Q1 CHEMISTRY, MEDICINAL European Journal of Medicinal Chemistry Pub Date : 2025-02-19 DOI:10.1016/j.ejmech.2025.117410
Danni Rao , Yiting Wang , Xiaolong Yang , Zhiwen Chen , Feifei Wu , Ran Ren , Yaoliang Sun , Yuanhui Lai , Lijie Peng , Lei Yu , Zhang Zhang , Shilin Xu
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Abstract

Targeting histone lysine demethylase 4 (KDM4) has emerged as a promising approach for cancer therapy. Despite significant progress in developing KDM4 inhibitors, many of these compounds demonstrate poor selectivity or limited cellular efficacy, and none have received approval for marketing. In this study, we designed and synthesized a series of novel KDM4-targeted proteolysis targeting chimeras (PROTAC) degraders, as exemplified by compound 11 (RDN8011). RDN8011 effectively degrades KDM4A-C while sparing KDM4D, and displays potent antiproliferative activity in esophageal cancer cells. Furthermore, this compound inhibits histone H3 lysine demethylation and induces cell cycle arrest and apoptosis. Collectively, this study provides a valuable chemical tool for exploring the functions of KDM4, and presents a novel effective strategy for targeting KDM4 in cancer treatment.

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发现首个PROTAC降解组蛋白赖氨酸去甲基化酶KDM4
靶向组蛋白赖氨酸去甲基化酶4 (KDM4)已成为一种有前景的癌症治疗方法。尽管在开发KDM4抑制剂方面取得了重大进展,但许多这些化合物表现出较差的选择性或有限的细胞功效,并且没有一个获得上市批准。在这项研究中,我们设计并合成了一系列新的靶向kdm4蛋白水解靶向嵌合体(PROTAC)降解物,以化合物11 (RDN8011)为例。RDN8011有效降解KDM4A-C,同时保留KDM4D,并在食管癌细胞中显示出强大的抗增殖活性。此外,该化合物抑制组蛋白H3赖氨酸去甲基化,诱导细胞周期阻滞和凋亡。综上所述,本研究为探索KDM4的功能提供了有价值的化学工具,并为靶向KDM4治疗癌症提供了一种新的有效策略。
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来源期刊
CiteScore
11.70
自引率
9.00%
发文量
863
审稿时长
29 days
期刊介绍: The European Journal of Medicinal Chemistry is a global journal that publishes studies on all aspects of medicinal chemistry. It provides a medium for publication of original papers and also welcomes critical review papers. A typical paper would report on the organic synthesis, characterization and pharmacological evaluation of compounds. Other topics of interest are drug design, QSAR, molecular modeling, drug-receptor interactions, molecular aspects of drug metabolism, prodrug synthesis and drug targeting. The journal expects manuscripts to present the rational for a study, provide insight into the design of compounds or understanding of mechanism, or clarify the targets.
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