The Complete Mitochondrial Genomes of Babylonia spirata and Babylonia zeylanica (Neogastropoda: Babyloniidae) Provide New Insights into Neogastropoda Phylogeny

IF 1.6 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochemical Genetics Pub Date : 2025-02-20 DOI:10.1007/s10528-025-11055-w
Li Wu, Hongwei Huang, Huai Yang, Yingying Ye, Baoying Guo, Weifeng Wang
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Abstract

The genus Babylonia, classified under Mollusca, Gastropoda, Neogastropoda, has been a subject of controversy concerning the phylogenetic relationships within Neogastropoda, a highly intricate group of predatory marine snails. In this study, we sequenced complete mitogenomes of Babylonia spirata and Babylonia zeylanica. Both mitogenomes consist of 37 genes, including 13 PCGs, 22 tRNAs, and 2 rRNAs, which is consistent with the gene numbers observed in most neogastropod snails. We analyzed base content, codon usage preference, and tRNA structure to describe the basic structural features. Additionally, phylogenetic trees were constructed using Maximum Likelihood and Bayesian Inference based on the complete mitogenomes of 43 Neogastropoda species. This analysis revealed that all 19 families formed monophyletic groups, collectively constituting seven monophyletic superfamilies. Moreover, by analyzing the gene arrangement characteristics of these 43 Neogastropoda species, we identified four distinct types of mitochondrial genome arrangements. This study strongly supports the monophyly of Neogastropoda families, contradicting previous molecular studies and providing fundamental insights for further phylogenetic studies in Neogastropoda.

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螺旋体巴比伦和泽兰巴比伦(新腹足目:巴比伦科)线粒体全基因组的研究为新腹足目系统发育提供了新的见解。
Babylonia属属于软体动物、腹足动物、新腹足动物,是一种高度复杂的掠食性海蜗牛,其系统发育关系一直存在争议。在这项研究中,我们对螺旋体巴比伦虫和泽兰巴比伦虫的完整有丝分裂基因组进行了测序。两个有丝分裂基因组都包含37个基因,包括13个PCGs, 22个trna和2个rrna,这与大多数新腹足类蜗牛中观察到的基因数量一致。我们分析了碱基含量、密码子使用偏好和tRNA结构来描述其基本结构特征。此外,基于43种新腹足动物的完整有丝分裂基因组,利用极大似然和贝叶斯推理构建了系统发育树。结果表明,19个科均形成单系群,共构成7个单系超科。此外,通过分析这43种新腹足动物的基因排列特征,我们确定了四种不同类型的线粒体基因组排列。该研究有力地支持了新腹足动物家族的单系性,与以往的分子研究相矛盾,为进一步研究新腹足动物的系统发育提供了基础。
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来源期刊
Biochemical Genetics
Biochemical Genetics 生物-生化与分子生物学
CiteScore
3.90
自引率
0.00%
发文量
133
审稿时长
4.8 months
期刊介绍: Biochemical Genetics welcomes original manuscripts that address and test clear scientific hypotheses, are directed to a broad scientific audience, and clearly contribute to the advancement of the field through the use of sound sampling or experimental design, reliable analytical methodologies and robust statistical analyses. Although studies focusing on particular regions and target organisms are welcome, it is not the journal’s goal to publish essentially descriptive studies that provide results with narrow applicability, or are based on very small samples or pseudoreplication. Rather, Biochemical Genetics welcomes review articles that go beyond summarizing previous publications and create added value through the systematic analysis and critique of the current state of knowledge or by conducting meta-analyses. Methodological articles are also within the scope of Biological Genetics, particularly when new laboratory techniques or computational approaches are fully described and thoroughly compared with the existing benchmark methods. Biochemical Genetics welcomes articles on the following topics: Genomics; Proteomics; Population genetics; Phylogenetics; Metagenomics; Microbial genetics; Genetics and evolution of wild and cultivated plants; Animal genetics and evolution; Human genetics and evolution; Genetic disorders; Genetic markers of diseases; Gene technology and therapy; Experimental and analytical methods; Statistical and computational methods.
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